Troubleshooting resources for errors or unexpected results (2)

Start by reviewing the troubleshooting FAQ. Common reasons and solutions for tool errors are explained. Most job errors can be resolved by correcting your input data’s format/content. Others indicate a tool setting/param…

This place is for Galaxy Main server support and discussion (2)

If you have a problem or question regarding site, create topic here. For other servers please see the list of categories.

Error when trying to run Galaxy on MacOs (12)
Workflow is not operating on a collection (10)
DESeq2 Factor Level Design (4)
alignment manipulation parameters (1)
Problems with Cuffdiff (2)
problem to logging out and in (2)
How to merge or generate FASTA file with the same chromosome (6)
ref_gene_id featurecounts (5)
Cluster error in galaxy (13)
When does in-file metadata matter, and what tools on galaxy can help me do so? (8)
Downloading histories by curl or wget and link only downloads an HTML file (5)
No Reference GFF file available in ClosestBed tool (4)
get a data out of the list list in Limma or edgeR (2)
why my transcript doesnt had the pvalue adj or fold change (9)
How can I improve very low assigned rate in featureCounts? (11)
Trying to make batch runs with tool that takes single text entry (2)
Is it possible to download 'Trinity.fasta.gene_trans_map' from Galaxy Trinity? (2)
Normalized Counts Files (1)
htseq-count shows fatal error every time (3)
Picard MergeSamFiles: Fatal error: Exit code 1 () merge SAM (4)
RNA-STAR and hg38 GTF reference annotation (4)
FTP Connecting Using FileZilla 530 Error (8)
Internal Server Error (500) and 504 (5)
Problems with DESeq2 (2)
how to replace these ID with official gene names? (6)
DESeq2 settings for FeatureCounts input; Compute versus Filter functions (15)
Problem with visualize bam file in IGV (3)
Understanding Indels with no Additional Info in VCF Output (2)