usegalaxy.org support

Topic	Replies	Views	Activity
Adding a reference genome to map RNAseq contig custom-genome , transcriptomics	1	39	April 16, 2025
Problems regarding file upload in DeSeq2 tool-help , deseq2	6	137	April 15, 2025
Error with FeatureCounts transcriptomics	5	125	April 14, 2025
How to extract count matrix from BAM files of scRNA-seq experiment in Galaxy Server? single-cell , rna-seq , featurecounts	1	188	April 10, 2025
need help with Falco tool transcriptomics	2	78	April 9, 2025
How do you use MultiQC on FastQC files taken from SRA files? multiqc , quality-control	1	3180	December 10, 2018
All tools fail immediately — FastQC and others return "There is no context to provide a response	2	64	April 7, 2025
Uploading not working Direct upload and File Transfer history-transfer , upload	6	167	April 7, 2025
NCBI BLAST+ blastn- no destination tool-help , ncbi_blastn_wrapper	1	32	April 4, 2025
DiffBind analysis tool-help , diffbind	1	69	April 5, 2025
Error with HISAT2 transcriptomics	3	58	April 3, 2025
Cannot "export history to file" history-transfer , troubleshooting , server-open-issue	12	114	April 3, 2025
Loading sqlite database file onto RStudio troubleshooting	1	38	April 1, 2025
Unsharing shared histories share-or-publish , server-open-issue	4	75	March 31, 2025
QUAST ERROR. Can someone offer guidence? troubleshooting , genome-annotation	12	156	March 31, 2025
Downloading data to own storage server history-transfer , user-preferences , storage-dashboard	3	73	March 31, 2025
At uploading got "Error Content Not Available" upload	2	42	March 31, 2025
Variant calling using snippy variant-analysis , snippy	1	78	March 29, 2025
Splitting BAM Mapped and Unmapped bamfilter	4	125	March 28, 2025
Failure to upload fastq files to my history upload	1	31	March 28, 2025
Haplotype analysis igv , variant-analysis	7	169	March 24, 2025
Server issue UseGalaxy.org March 17 2025: RESOLVED server-side-delay , queued-gray-datasets , server-status	6	152	March 24, 2025
Split R1/R2 from output fastq_manipulation	1	42	March 21, 2025
Allocation of server for teaching a class since the speed is low troubleshooting , training	10	100	March 18, 2025
Making contigs "this job is waiting to run" queued-gray-datasets	1	39	March 17, 2025
Troubleshooting: Krona Pie chart display metagenomics , add_a_column1	6	185	March 17, 2025
I attempted to run LOTUS2 on the Galaxy server multiple times, but the job failed devops-administration , gtn-tutorial , metagenomics	1	39	March 17, 2025
Snpeff database run errors tool-help , snpeff , snpeff_build_gb	3	152	March 13, 2025
Introductory Tutorial Genomics & Galaxy: Error on Overlapping Intervals gtn-tutorial , troubleshooting	3	55	March 13, 2025
VGP decontamination vgp	4	260	March 13, 2025