Topic Replies Activity
Troubleshooting resources for errors or unexpected results

Check to see if there is a known usegalaxy.* server issue. Server Status: https://galaxyproject.statuspage.io/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate …

2 November 28, 2018
Welcome to Galaxy Community Help 2 November 20, 2018
#Tags not propagated when building Dataset List 5 May 21, 2019
Tavaxy (Taverna to galaxy) 2 May 21, 2019
'Bam to fastq' programs on Windows ? 3 May 21, 2019
Convert from BAM to fastq 11 May 21, 2019
CTAT data manager - how to specify download location 1 May 20, 2019
Fatal error: heatmap2 tool 1 May 15, 2019
How to use UMI-tools extract 15 May 20, 2019
RNAseq analysis 3 May 20, 2019
Galaxy warns over quota 12 May 20, 2019
Building Phylogenetic Tree 1 May 20, 2019
Annotating Gene IDs -local-DESEQ2 rats AnnotateMyIDs 3 May 20, 2019
htseq-count gene IDs zero 1 May 20, 2019
htseq-count configuration problem 3 May 19, 2019
Genome index or dbkey not accessed by tools on a local Galaxy - Solution: Run tool-specific Data Managers 6 May 18, 2019
Request for adding the Infernal tool-suite 3 May 18, 2019
Issue with Extract Genomic DNA 8 May 18, 2019
Job errors at Galaxy Main https://usegalaxy.org -- status and updates 4 May 17, 2019
Job errors at Galaxy Main https://usegalaxy.org - status and updates 3 May 17, 2019
Htseq-count Feature type 3 May 17, 2019
htseq count issue using UCSC-sourced indexed bacterial genomes and NCBI reference annotation (mismatched chrom identifiers) 4 May 17, 2019
How to interpret bedcov tools output? 1 May 17, 2019
edgeR/DESeq2 error 4 May 17, 2019
Datasets and how jobs execute: How to interpret gray datasets with a "This job is waiting to run" message 2 May 16, 2019
GCC2019 Early Registration Ends This Friday 1 May 15, 2019
Kraken2 tool error 12 May 15, 2019
How to use the "favorite tool" function? 2 May 15, 2019
Local galaxy nginx max file download size 1GB 4 May 15, 2019
Problem with Humann2 running in Galaxy 1.9 4 May 14, 2019