Hi,
i am following the tutorial at Galaxy Installation with Ansible to setup a galaxy instance using ansible.
I am at the step afer setting up an ansible-vault where galaxy should be deployed and dependencies installed etc., unfortunately the tutorial does not take into account a situation where you are located behind a http(s) proxy as far as i can tell.
For the errors I got with git and pip I was able to set the proxy settings globally, but now for the nodejs install with nodeenv I am at a point where i cant seem to solve it.
Is there some way to specify proxy information in the ansible playbook or a work around to install it (though i guess the proxy will produce more problems down the line)?
Here is the last few outputs of ansbile and the error message for nodeenv:
TASK [galaxyproject.galaxy : Ensure galaxy_node_version is set] ******************************************************************************************************************************
included: /home/galaxy/galaxy_install_tutorial/galaxy/roles/galaxyproject.galaxy/tasks/_inc_node_version.yml for x
TASK [galaxyproject.galaxy : Collect Galaxy Node.js version file] ****************************************************************************************************************************
ok: [x]
TASK [galaxyproject.galaxy : Set Galaxy Node.js version fact] ********************************************************************************************************************************
ok: [x]
TASK [galaxyproject.galaxy : Check whether nodeenv is available] *****************************************************************************************************************************
ok: [x]
TASK [galaxyproject.galaxy : Create Galaxy virtualenv] ***************************************************************************************************************************************
skipping: [x]
TASK [galaxyproject.galaxy : Ensure pip is the desired release] ******************************************************************************************************************************
skipping: [x]
TASK [galaxyproject.galaxy : Ensure setuptools is latest working release (<58)] **************************************************************************************************************
skipping: [x]
TASK [galaxyproject.galaxy : Install nodeenv if it doesn't exist] ****************************************************************************************************************************
skipping: [x]
TASK [galaxyproject.galaxy : Report preferred Node.js version] *******************************************************************************************************************************
ok: [x] =>
galaxy_node_version: 16.13.2
TASK [galaxyproject.galaxy : Check if node is installed] *************************************************************************************************************************************
ok: [x]
TASK [galaxyproject.galaxy : Collect installed node version] *********************************************************************************************************************************
skipping: [x]
TASK [galaxyproject.galaxy : Remove node_modules directory when upgrading node] **************************************************************************************************************
ok: [x]
TASK [galaxyproject.galaxy : Install or upgrade node] ****************************************************************************************************************************************
fatal: [x]: FAILED! => changed=true
cmd:
- nodeenv
- -n
- 16.13.2
- -p
delta: '0:04:20.971769'
end: '2023-01-23 12:56:49.502045'
msg: non-zero return code
rc: 1
start: '2023-01-23 12:52:28.530276'
stderr: |2-
* Install prebuilt node (16.13.2) .
Traceback (most recent call last):
File "/usr/lib/python3.8/urllib/request.py", line 1354, in do_open
h.request(req.get_method(), req.selector, req.data, headers,
File "/usr/lib/python3.8/http/client.py", line 1256, in request
self._send_request(method, url, body, headers, encode_chunked)
File "/usr/lib/python3.8/http/client.py", line 1302, in _send_request
self.endheaders(body, encode_chunked=encode_chunked)
File "/usr/lib/python3.8/http/client.py", line 1251, in endheaders
self._send_output(message_body, encode_chunked=encode_chunked)
File "/usr/lib/python3.8/http/client.py", line 1011, in _send_output
self.send(msg)
File "/usr/lib/python3.8/http/client.py", line 951, in send
self.connect()
File "/usr/lib/python3.8/http/client.py", line 1418, in connect
super().connect()
File "/usr/lib/python3.8/http/client.py", line 922, in connect
self.sock = self._create_connection(
File "/usr/lib/python3.8/socket.py", line 808, in create_connection
raise err
File "/usr/lib/python3.8/socket.py", line 796, in create_connection
sock.connect(sa)
OSError: [Errno 101] Network is unreachable
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/srv/galaxy/venv/bin/nodeenv", line 8, in <module>
sys.exit(main())
File "/srv/galaxy/venv/lib/python3.8/site-packages/nodeenv.py", line 1079, in main
create_environment(env_dir, opt)
File "/srv/galaxy/venv/lib/python3.8/site-packages/nodeenv.py", line 956, in create_environment
install_node(env_dir, src_dir, opt)
File "/srv/galaxy/venv/lib/python3.8/site-packages/nodeenv.py", line 721, in install_node
install_node_wrapped(env_dir, src_dir, opt)
File "/srv/galaxy/venv/lib/python3.8/site-packages/nodeenv.py", line 743, in install_node_wrapped
download_node_src(node_url, src_dir, opt)
File "/srv/galaxy/venv/lib/python3.8/site-packages/nodeenv.py", line 570, in download_node_src
dl_contents = io.BytesIO(urlopen(node_url).read())
File "/srv/galaxy/venv/lib/python3.8/site-packages/nodeenv.py", line 606, in urlopen
return urllib2.urlopen(req)
File "/usr/lib/python3.8/urllib/request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "/usr/lib/python3.8/urllib/request.py", line 525, in open
response = self._open(req, data)
File "/usr/lib/python3.8/urllib/request.py", line 542, in _open
result = self._call_chain(self.handle_open, protocol, protocol +
File "/usr/lib/python3.8/urllib/request.py", line 502, in _call_chain
result = func(*args)
File "/usr/lib/python3.8/urllib/request.py", line 1397, in https_open
return self.do_open(http.client.HTTPSConnection, req,
File "/usr/lib/python3.8/urllib/request.py", line 1357, in do_open
raise URLError(err)
urllib.error.URLError: <urlopen error [Errno 101] Network is unreachable>
stderr_lines: <omitted>
stdout: ''
stdout_lines: <omitted>
PLAY RECAP ***********************************************************************************************************************************************************************************
x : ok=78 changed=8 unreachable=0 failed=1 skipped=43 rescued=0 ignored=0