Hi there, I’m following the tutorial for ATAC-seq analysis for the platform. They use Genrich for peak calling but it doesn’t show up when I look for it in “tools”. Isn’t it available yet? Thanks!

Hi, I am very happy to see that this tutorial is used. When you go to the tutorial webpage, in the overview frame, you have an icon written Galaxies. If you click on it, you will see where you can run the full pipeline. As you will see, you can run it on usegalaxy.eu . I hope it helps, Best

ATAC-seq analysis and tutorial

jennaj September 13, 2019, 4:04pm 5

Thank you @lldelisle!!

You are definitely correct. Below is just a bit more help where I shared this same info in more generalized terms:

Topic		Replies	Views
How to do differential expression analysis on ATAC-SEQ atac-seq , rstudio	1	351	June 14, 2023
chip seq analysis using single end usegalaxy.org support gtn-tutorial , workflow , galaxy-local , epigenetics	1	377	January 3, 2022
Missing tool: Annotate DESeq2/DEXSeq output tables usegalaxy.org support gtn-tutorial , tool-install , public-galaxy-server , dexseq	1	2775	October 16, 2019
BAM file analysis -- Variant analysis tutorials gtn-tutorial	1	1003	May 21, 2020
RNAseq variant calling usegalaxy.eu support	4	564	August 28, 2021

ATAC-seq analysis and tutorial

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