# Cd-hit doubts if the representative sequences are in the same order as clusters

**URL:** <https://help.galaxyproject.org/t/cd-hit-doubts-if-the-representative-sequences-are-in-the-same-order-as-clusters/16454>\
**Category:** Uncategorized\
**Tags:** tool-help, cd\_hit, format\_cd\_hit\_output\
**Created:** [October 30, 2025, 11:51am UTC](https://help.galaxyproject.org/t/cd-hit-doubts-if-the-representative-sequences-are-in-the-same-order-as-clusters/16454 "2025-10-30T11:51:07Z")\
**Posts on this page:** 1\
**Showing post:** 4

<div class="post-metadata">

**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [November 3, 2025, 10:45pm UTC](https://help.galaxyproject.org/t/cd-hit-doubts-if-the-representative-sequences-are-in-the-same-order-as-clusters/16454/4 "2025-11-03T22:45:45Z")

</div>

Hi @Ines_Leao

We you like to share your history back, so I can take a closer look and try to help more specifically with your use case? You can post the link back here.

- [How to get faster help with your question](https://help.galaxyproject.org/t/how-to-get-faster-help-with-your-question/11469)

We can help to confirm there isn’t some problem with the tool, or that specific version of the tool, plus explain how to match up the files if that is needed.

Thanks! 🙂

---

_[View the full topic](https://help.galaxyproject.org/t/cd-hit-doubts-if-the-representative-sequences-are-in-the-same-order-as-clusters/16454)._