# ChIP sequencing

**URL:** <https://help.galaxyproject.org/t/chip-sequencing/17461>\
**Category:** usegalaxy.org support\
**Tags:** troubleshooting, transcriptomics, usinggalaxy\
**Created:** [February 16, 2026, 5:28pm UTC](https://help.galaxyproject.org/t/chip-sequencing/17461 "2026-02-16T17:28:47Z")\
**Posts on this page:** 2\
**Page:** 1

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**Author:** ![Krishnendu\_Goswami](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/krishnendu_goswami/32/8395_2.png) [@Krishnendu\_Goswami](https://help.galaxyproject.org/u/Krishnendu_Goswami)\
**Post date:** [February 16, 2026, 5:28pm UTC](https://help.galaxyproject.org/t/chip-sequencing/17461/1 "2026-02-16T17:28:47Z")

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I am trying to analysis ChIP seq data . I got MultiQC, coverage from MACS2 (bigwig), bedtools annotatedbed on data. I hope i got everything, now i need to go for further step to find the the promoter region, but I am unable to the same. Please help me. I can share my ID and password for anybody who can help me

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [February 16, 2026, 6:02pm UTC](https://help.galaxyproject.org/t/chip-sequencing/17461/2 "2026-02-16T18:02:34Z")

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Welcome @Krishnendu_Goswami

First, for this

> [@Krishnendu\_Goswami](#):
>
> I can share my ID and password for anybody who can help me

You never need to grant access to your account when working in Galaxy! Instead, **you can share your work then others can review, offer feedback, or import, do stuff in their copy, share back with you!!** This protects your data – someone who can log into your account could do anything you could do, including purging histories or the account itself! Maybe by accident!

Then for your primary question about example protocols, have you seen the 🎓 Galaxy Training Network (GTN) tutorials and workflow templates yet?

This would be a good place to start.

> **[Epigenetics / Tutorial List](https://training.galaxyproject.org/training-material/topics/epigenetics/)**
>
> DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.

With this tutorials like these seeming to be the closest to your current steps so far.

> **[Epigenetics / Identification of the binding sites of the T-cell acute...](https://training.galaxyproject.org/training-material/topics/epigenetics/tutorials/tal1-binding-site-identification/tutorial.html)**
>
> DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.

> **[Epigenetics / DNA Methylation data analysis / Hands-on: DNA Methylation data...](https://training.galaxyproject.org/training-material/topics/epigenetics/tutorials/methylation-seq/tutorial.html)**
>
> DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.

And this one exploring TSS sites specifically.

> **[Introduction to Galaxy Analyses / From peaks to genes / Hands-on: From peaks...](https://training.galaxyproject.org/training-material/topics/introduction/tutorials/galaxy-intro-peaks2genes/tutorial.html)**
>
> Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Hope this helps! If you get stuck,you can share your history back here for community feedback! This includes an FAQ that explains how to share data! 🙂

- [How to get faster help with your question](https://help.galaxyproject.org/t/how-to-get-faster-help-with-your-question/11469)
