# Cluster on intervals error

**URL:** https://help.galaxyproject.org/t/cluster-on-intervals-error/17562
**Category:** usegalaxy.eu support
**Tags:** troubleshooting
**Created:** [March 11, 2026, 2:44pm UTC](https://help.galaxyproject.org/t/cluster-on-intervals-error/17562 "2026-03-11T14:44:00Z")
**Posts on this page:** 6
**Page:** 1

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### Author: ![jmuser](https://avatars.discourse-cdn.com/v4/letter/j/a3d4f5/32.png) [@jmuser](https://help.galaxyproject.org/u/jmuser)
#### Post date: [March 11, 2026, 2:44pm UTC](https://help.galaxyproject.org/t/cluster-on-intervals-error/17562/1 "2026-03-11T14:44:00Z")

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I am trying to run _Cluster the intervals of a dataset_. The dataset was uploaded as a tab-delimited txt file with intervals (chr, start, end), with format set to interval. However, I keep getting an error, for instance.

_Uncaught exception in exposed API method:_

_The server could not complete this request. Please verify your parameter settings, retry submission and contact the Galaxy Team if this error persists. A transcript of the submitted data is shown below._

_{  
“history\_id”: “11ac94870d0bb33a11a4c12ff2acb723”,  
“tool\_id”: “toolshed.g2.bx.psu.edu/repos/devteam/cluster/gops\_cluster\_1/1.0.0”,  
“tool\_version”: “1.0.0”,  
“\_\_tags”: [],  
“inputs”: {  
“input1”: {  
“batch”: false,  
“product”: false,  
“values”: [  
{  
“id”: “26c75dcccb616ac873e01a5a9564fb0e”,  
“src”: “hda”,  
“map\_over\_type”: null  
}  
]  
},  
“distance”: “1”,  
“minregions”: “2”,  
“returntype”: “1”  
}  
}_

I wonder what is wrong with the coordinates files, or there is a problem with the _Cluster_ tool? Though I keep getting a similar error message for tool _Complement intervals of a dataset_, thus the problem may rather be related to the intervals dataset.

Thanks in advance

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### Author: ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)
#### Post date: [March 11, 2026, 4:24pm UTC](https://help.galaxyproject.org/t/cluster-on-intervals-error/17562/2 "2026-03-11T16:24:03Z")

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Hi @jmuser

Thanks for sharing the tool errors. This might be due to a change on the server. I’ll try to test independently to replicate.

Are you working at [UseGalaxy.eu](http://UseGalaxy.eu) or at a different public server? Would you like to share your history?

- [FAQ: Sharing your History](https://training.galaxyproject.org/training-material/faqs/galaxy/histories_sharing.html)

Let’s start there! 🙂

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### Author: ![jmuser](https://avatars.discourse-cdn.com/v4/letter/j/a3d4f5/32.png) [@jmuser](https://help.galaxyproject.org/u/jmuser)
#### Post date: [March 12, 2026, 10:48am UTC](https://help.galaxyproject.org/t/cluster-on-intervals-error/17562/3 "2026-03-12T10:48:33Z")

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Hi @jennaj,

Yes, I am encountering this problem at [UseGalaxy.eu](http://UseGalaxy.eu).

Here is the link to the history. **(Please keep private.)**

There are currently only two datasets with coordinates. Files/datasets without “#CHROM START END” produced the same error.

I just tested the Cluster tool with basically the same files/datasets at [UseGalaxy.org](http://UseGalaxy.org) — it works fine there.

Thanks a lot,  
Jens

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### Author: ![wm75](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/wm75/32/56_2.png) [@wm75](https://help.galaxyproject.org/u/wm75)
#### Post date: [March 12, 2026, 9:03pm UTC](https://help.galaxyproject.org/t/cluster-on-intervals-error/17562/4 "2026-03-12T21:03:47Z")

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This is very likely a remaining issue from our recent configuration changes on Galaxy Europe.

We’ll look into it.

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### Author: ![wm75](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/wm75/32/56_2.png) [@wm75](https://help.galaxyproject.org/u/wm75)
#### Post date: [March 14, 2026, 2:30pm UTC](https://help.galaxyproject.org/t/cluster-on-intervals-error/17562/5 "2026-03-14T14:30:05Z")

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Turns out it was an older issue, but it’s now fixed for both Cluster and Complement.

Thanks for letting us know!

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### Author: ![jmuser](https://avatars.discourse-cdn.com/v4/letter/j/a3d4f5/32.png) [@jmuser](https://help.galaxyproject.org/u/jmuser)
#### Post date: [March 16, 2026, 10:57am UTC](https://help.galaxyproject.org/t/cluster-on-intervals-error/17562/6 "2026-03-16T10:57:39Z")

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Thanks to you, too.
