# DE lncRNA analysis pipeline

**URL:** <https://help.galaxyproject.org/t/de-lncrna-analysis-pipeline/2260>\
**Category:** usegalaxy.org support\
**Tags:** gtn-tutorial, troubleshooting\
**Created:** [October 9, 2019, 6:36pm UTC](https://help.galaxyproject.org/t/de-lncrna-analysis-pipeline/2260 "2019-10-09T18:36:05Z")\
**Posts on this page:** 1\
**Showing post:** 2

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [October 11, 2019, 9:02pm UTC](https://help.galaxyproject.org/t/de-lncrna-analysis-pipeline/2260/2 "2019-10-11T21:02:18Z")

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Hi,

Updated tutorials for DE analysis can be found here under the “Transcriptomics” section. These avoid using Tophat and Cuffdiff, too (are also considered deprecated).

> [@Troubleshooting resources for errors or unexpected results](https://help.galaxyproject.org/t/troubleshooting-resources-for-errors-or-unexpected-results/42/1):
>
> [Galaxy Training Network Tutorials](https://training.galaxyproject.org): Some [GTN](https://galaxyproject.org/teach/gtn/) tutorials are appropriate for [Galaxy Main](https://usegalaxy.org) and some are not. Where you can run each is noted per tutorial – click on the _Galaxy instances_ gear icon ![galaxyserversGTN](https://us1.discourse-cdn.com/flex020/uploads/galaxy/original/1X/1287f50cfcdaa1aad750fe323f96995260ac4947.png) to review the [Public Galaxy](https://galaxyproject.org/use/) server choices. If a tutorial is supported by a pre-configured [Galaxy Docker](https://hub.docker.com/r/bgruening/galaxy-stable/) training image, instructions for how to get it will be listed below the tutorial listings, per category.

If you run into any problems, this FAQ summarizes the most common reasons with solutions/link outs to other FAQs [https://galaxyproject.org/support/:](https://galaxyproject.org/support/:)

- [Extended Help for Differential Expression Analysis Tools](https://galaxyproject.org/support/diff-expression/)

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_[View the full topic](https://help.galaxyproject.org/t/de-lncrna-analysis-pipeline/2260)._