I’m trying to run DESeq2 with Sailfish files. I have two factors (three files for each factor) and I’m running the program with my own gene mapping file. I have been getting the below error:
Error in read.table(tx2gene, header = hasHeader) :
more columns than column names
Calls: get_deseq_dataset -> read.table
Has anyone seen this? I’m not quite sure what the problem is.