Dear All,
I wanted to perform differential expression analysis between 7 different cell lines, however, I just noticed that just the results are based on differential expression between just the first two cell lines which were input as factors. Is there a way we can perform pairwise differential expression between all cell lines and then isolate the genes which are differentially expressed between all cell lines as we can do in limma?
I look forward to your suggestions and some help on this topic,
Best,
S