I need to use a tool to detect ribosomal RNA sequences in bacterial genome sequences. I have used the “barrnap” tool, but it only says in which scaffold the sequences are but it does not “isolate” them. I wanted to ask if there is another tool better than barrnap? if so, could anyone of you please make it together with barrnap available at https://usegalaxy.eu/?
Best and thanks a lot in advance,