Downloading data

usegalaxy.eu support
, ,
#1

hello
i runned kind off 20 jobs that ended but i cant download the results as a file , anyone could know why so ?

1 Like
#2

Hello @lambard_alexandre

Please see this FAQ for how to download individual datasets and dataset collections: Downloading Data

Keep in mind that if you have set up your web browser to block automatic downloads or ā€œcookiesā€, you may need to adjust or clear that setting. Some web browsers will note that a download was blocked with a warning and allow you to ā€œclickā€ on that warning to permit downloads from specific sites.

If that does not help, please explain the problem with more details. Screenshots can help.

Thanks!

#3

/data/dnb02/galaxy_db/job_working_directory/007/541/7541896/working
/opt/galaxy

fooooo
/data/0/interproscan/interproscan-5.36-75.0/
/bin/java
/bin/java
2020-03-31 12:02:06,830 [main] [uk.ac.ebi.interpro.scan.jms.main.Run:417] FATAL - Exception thrown wh

thats what i have for example , i cant donwload it with the icon , when i tried to download the whol e history , i have empty file ā€¦

#4

Thanks @lambard_alexandre

Letā€™s ask the administrators at the Galaxy EU server for more help. What is going wrong is not clear.

ping @wm75 @bjoern.gruening

#5

@lambard_alexandre we need more information from you? Which history is that, are all datasets green? Can you view them when you click on the :eye: ?

1 Like
#6

its an history with kind off 15 fasta files of protein or nucleotides sequences of brown algaes genomes . i runned interproscan tool for all thoses genomes . i have all runs in green yes and i cant vie the data when i click on the eye icon

#7

how can we see full logs ? it seems that my jobs failed but i donā€™t know why

i also have this log

/data/dnb02/galaxy_db/job_working_directory/007/553/7553466/working
/opt/galaxy

fooooo
/data/0/interproscan/interproscan-5.36-75.0/
Java not found. Please install Java 1.8 and place it on your path,
or edit the interproscan.sh script to refer to your Ja

#8

Hello,

I am also having this problem with InterProScan (toolshed.g2.bx.psu.edu/repos/bgruening/interproscan5/interproscan/5.0.0).

Is there a configuration issue or other issue with this tool?

The following message appears (in the right-side panel that is green as if the job has finished successfully but there is no data) (similar to above query)

/data/dnb02/galaxy_db/job_working_directory/008/195/8195819/working
/opt/galaxy

fooooo
/data/0/interproscan/interproscan-5.36-75.0/
Java not found. Please install Java 1.8 and place it on your path,
or edit the interproscan.sh script to refer to your Ja

1 Like
#9

@lambard_alexandre & @paul_daly

As a guess, this looks like a configuration issue at the usegalaxy.eu server.

Ping @bjoern.gruening @wm75

#10

@lambard_alexandre, Hi I am using cufflinks in galaxy Europe for RNA seq analysis but I couldnā€™t find any reference annotation guide " B73 RefGen_v4" of maize, I tried to get from the web but I couldnā€™t, the built-in reference genome is present in tophat but not in cufflinks. How can I get B73 RefGen_v4" reference genome assembly of maize into cufflinks for expression analysis?