Hello everyone, I am new in usegalaxy, and I want to execute exomeDepth tool. I have files correct for this (BED file, two file.bam, one for control and the other for de treatment) in theoric. when I execute and finish the tool, I read this messenger
In scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
number of items read is not a multiple of the number of columns
Error in countBamInGRanges.exomeDepth(bam.file = bam, index = index, granges = target, :
Some sequences in the target data frame cannot be found in the index of the BAM file
Calls: suppressMessages … withCallingHandlers → getBamCounts → countBamInGRanges.exomeDepth
I want know if someone could help me with this??