Error message: "No space left on device"

Exception in thread “main” htsjdk.samtools.util.RuntimeIOException: No space left on device
at htsjdk.samtools.util.SortingCollection.spillToDisk(
at htsjdk.samtools.util.SortingCollection.add(
at htsjdk.samtools.SAMFileWriterImpl.addAlignment(
at pt2.se2pe.Pop2FileWriter.write(
at pt2.se2pe.Se2PeParser.parseCommandLine(
at pt2.Main.main(

when i used popoolationTE2 to merge bam file, i get this error.But i do not know the reason

Hi @jiahui_xie

This happened at the public Galaxy server

If so, this was probably a transient cluster problem (the disc was full when this job ran). Please try a rerun.

Should you get that error again, please send in a bug report from the red error datasets (all). It would be helpful to include the URL of this Q&A topic in the comments.

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