Fatal error: Exit code 1 () using Shovill

usegalaxy.org support
1

Hi, When I try to Shovill I keep getting this error:
Fatal error: Exit code 1 ()
[kmc] Error: some error while reading fastq file, please contact authors
[shovill] Hello stranger
[shovill] You ran: /cvmfs/main.galaxyproject.org/…

Details
[shovill] Estimating genome size by counting unqiue 21-mers > frequency 10
[shovill] Running: kmc -sm -m15 -t6 -k21 -ci10 /galaxy-repl/main/files/047/144/dataset_47144902.dat /galaxy-repl/main/jobdir/031/943/31943977/_job_tmp/VcBtzr6F7N/kmc /galaxy-repl/main/jobdir/031/943/31943977/_job_tmp/VcBtzr6F7N 2>&1 | sed ‘s/^/[kmc] /’ | tee -a shovill.log
[shovill] Could not determine genome size from ‘’

I used the trimmed files in TrimGalore! and It’s through FastQC.
I haven’t seen any errors up to that point.
Any tip on how to solve it will be greatly appreciated.
thank you!

2

Jack did you ever receive a response to this question, I am having the same issue. I used this tool 2 days ago on data that I processed the same way, so I don’t understand what the problem is.