# fgsea of gene sets in .gmt does not provide any output

**URL:** <https://help.galaxyproject.org/t/fgsea-of-gene-sets-in-gmt-does-not-provide-any-output/11099>\
**Category:** Uncategorized\
**Tags:** transcriptomics, rna-seq\
**Created:** [November 6, 2023, 11:01am UTC](https://help.galaxyproject.org/t/fgsea-of-gene-sets-in-gmt-does-not-provide-any-output/11099 "2023-11-06T11:01:34Z")\
**Posts on this page:** 1\
**Showing post:** 2

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**Author:** ![Sebastian](https://avatars.discourse-cdn.com/v4/letter/s/4da419/32.png) [@Sebastian](https://help.galaxyproject.org/u/Sebastian)\
**Post date:** [November 6, 2023, 1:22pm UTC](https://help.galaxyproject.org/t/fgsea-of-gene-sets-in-gmt-does-not-provide-any-output/11099/2 "2023-11-06T13:22:18Z")

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Update:  
I solved the problem.  
Uploading and using the .gmt file was not the problem.

For this specific but confined gene set, I simply set the “Minimum size of gene set” too high.

Thanks for anyone who put some thoughts into it.

Best regards,  
Sebastian

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