generate count matrix from salmon output in galaxy

hello i have generated qasi alignment file using salmon tool, it shows transcript id and lenght ect… now how do i get the matrix of count for every sample i have ( my data is from ncbi)

Hi @H_Audrey,
if you are interested in performing a differential expression analysis, DESeq2 allows you to use directly the output generated by Salmon. Here you can find an example.

Regards