# Generating MD Topology (ACPYPE)

**URL:** <https://help.galaxyproject.org/t/generating-md-topology-acpype/15017>\
**Category:** usegalaxy.eu support\
**Tags:** proteomics\
**Created:** [March 16, 2025, 3:02pm UTC](https://help.galaxyproject.org/t/generating-md-topology-acpype/15017 "2025-03-16T15:02:44Z")\
**Posts on this page:** 1\
**Showing post:** 5

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [March 17, 2025, 6:48pm UTC](https://help.galaxyproject.org/t/generating-md-topology-acpype/15017/5 "2025-03-17T18:48:31Z")

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Ok, thanks for the update @XavierB. You are still welcome to share you history for feedback. Or, you can check your job logs to see what the tools are reporting in the logs. These are from the underlying tool mostly, so the error messages might have solutions reported somewhere if you search.

Where to find the logs is in the same link I posted above:

- [How to get faster help with your question](https://help.galaxyproject.org/t/how-to-get-faster-help-with-your-question/11469) – see the Job Details view for the `stdout/stderr` messages.

There still might be an incompatibility between the tool wrappers, but until we have an example, we are mostly just guessing, and that probably won’t find a solution with such complicated tools/data.

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_[View the full topic](https://help.galaxyproject.org/t/generating-md-topology-acpype/15017)._