# Getting partial conversion from transcript to gene when using Salmon on Galaxy

**URL:** <https://help.galaxyproject.org/t/getting-partial-conversion-from-transcript-to-gene-when-using-salmon-on-galaxy/1726>\
**Category:** usegalaxy.org support\
**Tags:** salmon\
**Created:** [July 12, 2019, 3:11am UTC](https://help.galaxyproject.org/t/getting-partial-conversion-from-transcript-to-gene-when-using-salmon-on-galaxy/1726 "2019-07-12T03:11:09Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![Daniel10](https://avatars.discourse-cdn.com/v4/letter/d/da6949/32.png) [@Daniel10](https://help.galaxyproject.org/u/Daniel10)\
**Post date:** [July 12, 2019, 3:11am UTC](https://help.galaxyproject.org/t/getting-partial-conversion-from-transcript-to-gene-when-using-salmon-on-galaxy/1726/1 "2019-07-12T03:11:09Z")

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Hi,  
I was hoping someone can please help me with an issue I can’t really figure out…

I ran samples on Salmon through Galaxy. I also provided a conversion file, with transcript name and gene ID (C. elegans). However, when I look on the “gene quantification” output, which supposed to have “WBGene00022229” for example, many of the entries have the gene name (F54D7.7 for example). I checked and these genes are mapped in the file I provided, but they have slight modification (for example, F54D7.7.1 instead of F54D7.7).  
When I ran it through tximport on RStudio and then I get all the genes, but I don’t understand why running it on Galaxy don’t work.  
I want to compare the Galaxy results with the tximport results…

Thanks  
Daniel