I am very new to Galaxy and hope for help with a - most likely - very trivial problem. I am trying to run the Infinium Human Methylation BeadChip module according to the respective Tutorial but using my own data. Unfortunately, I now encountered the error:
Error in read.metharray(list.files(pattern = “_Red.idat”)) :
[read.metharray] Trying to parse IDAT files with different array size but seemingly all of the same type.
You can force this by ‘force=TRUE’, see the man page ?read.metharray
According to what I found in the Bioconductor forum, this seems to happen quite regularly with EPIC data and it should be okay to try the ‘force=TRUE’. But, unfortunately, I do not know how to adjust this setting using Galaxy.
Any advice would be very welcome!
Many thanks in advance and best wishes,