Masigpro tool Error

Hi
what does this Error means ? Im used Masigpro for DEG in time points. P.s i dont understand what is experimental design mean and what should i put for it

Error Details

Execution resulted in the following messages:

Fatal error: An undefined error occurred, please check your input carefully and contact your administrator.

Tool generated the following standard error:

Error in FUN(newX[, i], …) : invalid ‘type’ (character) of argument Calls: maSigPro -> p.vector -> apply

Hi
I am getting the same error.
What is a correct way to format experiment design matrix. Help is appreciated.
Thanks

Hi, What tool you use for your quantification step ?

Hi,
I used limmavoom-filtered counts.

Use freaturecount or htseq count. and then put every timeseries in separate Factor, Remember to choose “data source” to featurecount or htseqcount mode.

Hi,
I tried putting individual count files but getting same error
Error in FUN(newX[, i], …) : invalid ‘type’ (character) of argument
Calls: maSigPro -> p.vector -> apply.

I am struggling with this tool a lot. Really appreciate your help.
Thanks.

1 Like

Did you ever figure out the cause of the error? I’m having the same issue.

Hi,
I switched to using R instead of Galaxy.

:smiling_face_with_tear:

I was trying to avoid R but I’m getting to that point too. Thanks!