MiXCR clonotype data

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#1

I’m having trouble viewing the 512 successfully aligned TCR clonotypes from MiXCR. See 1) report of successful MiXCR run with 513 clonotypes and 2) empty clonotype file

Analysis date: Thu Oct 28 16:38:14 CEST 2021
Input file(s): mixcr_analysis.clna
Output file(s): mixcr_analysis.contigs.clns
Version: 3.0.5; built=Mon Feb 25 00:04:20 CET 2019; rev=af538f7; lib=repseqio.v1.5
Command line arguments: --report mixcr_analysis.report mixcr_analysis.clna mixcr_analysis.contigs.clns
Analysis time: 59.16s
Initial clonotype count: 513
Final clonotype count: 513 (100%)
Longest contig length: 553
Clustered variants: 0 (0%)
Reads in clustered variants: 0.0 (0%)
Reads in divided (newly created) clones: 0.0 (0%)

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#2

Hi @OrangeOwl23,
could you share your history with me? I’ll have a look at it.

Regards

#3

Do I need your email in order to do that?

#4

Hi @gallardoalba !

Any luck with troubleshooting this?

Kindly,
John

#5

Hi,
I’ll provide a feedback today; sorry for the delay.

Regards

#6

Thank you!!

#7

Hi @OrangeOwl23,
I’ll update the tool; I hope that it could solve the problems. It will be probably available at the beginning of the next week.

Regards

#8

Sounds good, thank you! Let me know when you’d like me try running it again.

#9

I just ran the MiXCR pipeline again, and got the same results. Successful run, but an empty clonotype file. Any other troubleshooting ideas?

#10

Hi @OrangeOwl23,
can you share your history with the new tool version? I’ll have a look.

Regards