# MrBayes - no output files found

**URL:** <https://help.galaxyproject.org/t/mrbayes-no-output-files-found/16275>\
**Category:** usegalaxy.eu support\
**Tags:** tool-request, tool-help, mrbayes, devops, tool-dev\
**Created:** [September 18, 2025, 2:00pm UTC](https://help.galaxyproject.org/t/mrbayes-no-output-files-found/16275 "2025-09-18T14:00:29Z")\
**Posts on this page:** 1\
**Showing post:** 5

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [July 30, 2026, 6:12pm UTC](https://help.galaxyproject.org/t/mrbayes-no-output-files-found/16275/5 "2026-07-30T18:12:31Z")

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Another request came in. Linking together.

This also seems like a good community project for anyone interested in taking it on!

> [@MrBayes consensus tree file not shown in output](https://help.galaxyproject.org/t/mrbayes-consensus-tree-file-not-shown-in-output/18221/2):
>
> I opened a ticket requesting that more of the raw and intermediate data files be published as outputs. My request was intentionally broad, so please feel free to clarify which files would be most useful.
> 
> From what I can tell, the intermediate files are generated during the run but discarded when the job completes. To retain them in the Galaxy history, the tool wrapper would need to define those files in the output section of the tool XML.
> 
> This tool wrapper has not been updated in about ten years and is currently available only on [UseGalaxy.eu](http://UseGalaxy.eu), but let’s see what the developers think. There may be implementation details that make this more difficult than it initially appears.

- [Enhancement mrbayes: request to write all raw output files to history · Issue #282 · phac-nml/galaxy\_tools · GitHub](https://github.com/phac-nml/galaxy_tools/issues/282)

> <https://github.com/phac-nml/galaxy_tools/blob/b9a9397b9aa3c5b3ff8325386c5920da964abdbd/tools/mrbayes/mrbayes.xml#L126-L128>

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