Galaxy Community Help
MultiBamSummary bug?
Cindy
October 29, 2020, 10:59pm
1
plotcorrelation
748×454 88.9 KB
correlation
918×817 111 KB
I use MultiBamSummary and plotCorrelation to calculate correlation among RNA-seq samples, all using default parameters; however, the 8 BAM files all get the value 0.84 to 0.86. I don’t think it make sense. What’s the problem?
Related Topics
Topic
Replies
Views
Activity
Unassigned_Ambiguity problem in featureCounts
usegalaxy.org support
transcriptomics
4
1233
May 10, 2021
count reads per gene
2
346
September 21, 2020
High unassigned ambiguity counts for featureCounts data on bacterial transcriptomics
usegalaxy.org support
2
1559
March 25, 2020
Too many duplicated sequences OR unassigned because of mapping quality
troubleshooting
,
mapping
,
transcriptomics
,
tool-help
,
featurecounts
2
103
March 20, 2024
Visualize overlaps in multiple lines with two conditions each?
usegalaxy.org support
transcriptomics
,
limma
,
featurecounts
2
288
December 14, 2022