# N50 statistic for rnaviralSPades

**URL:** <https://help.galaxyproject.org/t/n50-statistic-for-rnaviralspades/12907>\
**Category:** usegalaxy.eu support\
**Tags:** assembly, tool-help, spades\_rnaviralspades\
**Created:** [July 9, 2024, 9:13am UTC](https://help.galaxyproject.org/t/n50-statistic-for-rnaviralspades/12907 "2024-07-09T09:13:59Z")\
**Posts on this page:** 4\
**Page:** 1

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**Author:** ![Serkan\_ONDER](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/serkan_onder/32/5793_2.png) [@Serkan\_ONDER](https://help.galaxyproject.org/u/Serkan_ONDER)\
**Post date:** [July 9, 2024, 9:13am UTC](https://help.galaxyproject.org/t/n50-statistic-for-rnaviralspades/12907/1 "2024-07-09T09:13:59Z")

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Dear All, do you have any idea about how could I see N50 statistic after denovo assembly via rnaviralSPades in Galaxy Europe?. I have already tried to include log, contigstat and scaffoldstat options as output during the analyses however there is no information about N50 statistics in output files.

 ![rnaviralSPades_N50](https://us1.discourse-cdn.com/flex020/uploads/galaxy/original/2X/4/4f1ba22b4d536f7405a12299d37ed74fe81a50ab.png)

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [July 9, 2024, 6:25pm UTC](https://help.galaxyproject.org/t/n50-statistic-for-rnaviralspades/12907/2 "2024-07-09T18:25:40Z")

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Welcome, @Serkan_ONDER

Would a tool like **Quast** produce what you want? Another tool I can think of is **BlobToolKit** (visualization of statistics that include N50).

Both of those tools link to assembly tutorials, or you can review here directly → [Assembly / Tutorial List](https://training.galaxyproject.org/training-material/topics/assembly/). Those with QC or Quality Control in the title, plus others have QC steps along with the longer protocols.

Others are welcome to suggest more 🙂

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**Author:** ![Serkan\_ONDER](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/serkan_onder/32/5793_2.png) [@Serkan\_ONDER](https://help.galaxyproject.org/u/Serkan_ONDER)\
**Post date:** [July 10, 2024, 12:28pm UTC](https://help.galaxyproject.org/t/n50-statistic-for-rnaviralspades/12907/3 "2024-07-10T12:28:58Z")

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Dear @jennaj ,

Thank you so much for these great tools. I tried Quast just. It will be enough for me. Thanks 🙂

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [April 18, 2026, 1:52am UTC](https://help.galaxyproject.org/t/n50-statistic-for-rnaviralspades/12907/4 "2026-04-18T01:52:01Z")

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