# Persistent problems with RMSD analysis relate to the Guide "High Throughput Molecular Dynamics and Analysis"

**URL:** <https://help.galaxyproject.org/t/persistent-problems-with-rmsd-analysis-relate-to-the-guide-high-throughput-molecular-dynamics-and-analysis/13971>\
**Category:** Uncategorized\
**Tags:** proteomics\
**Created:** [November 23, 2024, 10:14am UTC](https://help.galaxyproject.org/t/persistent-problems-with-rmsd-analysis-relate-to-the-guide-high-throughput-molecular-dynamics-and-analysis/13971 "2024-11-23T10:14:11Z")\
**Posts on this page:** 1\
**Showing post:** 2

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [November 26, 2024, 2:03am UTC](https://help.galaxyproject.org/t/persistent-problems-with-rmsd-analysis-relate-to-the-guide-high-throughput-molecular-dynamics-and-analysis/13971/2 "2024-11-26T02:03:38Z")

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Hi @henrrik_prendushi

I ran through the workflow associated with the tutorial last week, and it worked fine. I can let you know that this works best at the [UseGalaxy.eu](http://UseGalaxy.eu) server for now. This was our conversation about it [Problems with RMSD analysis relate to the Guide "High Throughput Molecular Dynamics and Analysis"](https://help.galaxyproject.org/t/problems-with-rmsd-analysis-relate-to-the-guide-high-throughput-molecular-dynamics-and-analysis/13919)

Were you also able to get the workflows to run? When I looked at your history before I wasn’t able to tell what exactly went wrong, but it also looked like you were not running the workflow yet, which is why I suggest that. Do you think more is going on? How can I help with it more?

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_[View the full topic](https://help.galaxyproject.org/t/persistent-problems-with-rmsd-analysis-relate-to-the-guide-high-throughput-molecular-dynamics-and-analysis/13971)._