# planemo test/serve conda package installation

**URL:** <https://help.galaxyproject.org/t/planemo-test-serve-conda-package-installation/15056>\
**Category:** Uncategorized\
**Tags:** planemo\
**Created:** [March 20, 2025, 3:19pm UTC](https://help.galaxyproject.org/t/planemo-test-serve-conda-package-installation/15056 "2025-03-20T15:19:32Z")\
**Posts on this page:** 2\
**Page:** 1

<div class="post-metadata">

**Author:** ![breakthewall](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/breakthewall/32/3091_2.png) [@breakthewall](https://help.galaxyproject.org/u/breakthewall)\
**Post date:** [March 20, 2025, 3:19pm UTC](https://help.galaxyproject.org/t/planemo-test-serve-conda-package-installation/15056/1 "2025-03-20T15:19:33Z")

</div>

Hi there,

I’m trying to test a wrapper with Planemo on my local computer.

- `planemo` version:` 0.75.27`
- `galaxy` version: `release_24.2`
- wrapper depends on `curl`, `gzip`, `python-libsbml`, `requests`, `taxonid` and call a piece of Python code in command section
- running within both `_galaxy_` and fresh dedicated planemo conda envs on `macOS 15.3.2`

The command `planemo test --galaxy_root=<path>/galaxy my_wrapper.xml` raises the following error in `tool_test_output.json`:

```auto
from libsbml import readSBMLFromFile
ModuleNotFoundError: No module named 'libsbml'

```

Error `ModuleNotFoundError: No module named 'taxonid'` raises if I put `import taxonid` first in the Python code called by the wrapper.

The command `planemo serve --galaxy_root=<path>/galaxy my_wrapper.xml` raises the following one:

```auto
Solving environment: ...working... failed

PackagesNotFoundError: The following packages are not available from current channels:

  - taxonid

Current channels:

  - https://conda.anaconda.org/conda-forge/osx-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://conda.anaconda.org/bioconda/osx-64
  - https://conda.anaconda.org/bioconda/noarch

```

Same for `requests`, although both exist on `conda-forge/noarch`.

Any help would be very appreciated. Thank you!

---

<div class="post-metadata">

**Author:** ![breakthewall](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/breakthewall/32/3091_2.png) [@breakthewall](https://help.galaxyproject.org/u/breakthewall)\
**Post date:** [March 21, 2025, 2:23pm UTC](https://help.galaxyproject.org/t/planemo-test-serve-conda-package-installation/15056/2 "2025-03-21T14:23:50Z")

</div>

Ok, the source of the issue was that Galaxy (through `planemo` command) uses `$HOME/miniconda3` as conda path and this folder already existed on my computer with an old version of conda. Removing this folder led Galaxy to recreate a new miniconda folder with a fresh version of conda and the current issue just gone, i.e. packages `libsbml` and `taxonid` have been installed properly.