I’m trying to run featureCounts for zebrafish, however it returns the error:
ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file.
The specified gene identifier attribute is ‘gene_id’
An example of attributes included in your GTF annotation is’ ID = id1; Parent = rna0; Dbxref = GeneID: 192301, Genbank: NM_173235.3, ZFIN: ZDB-GENE-020419-25; gbkey = mRNA; gene = rpl24; product = ribosomal protein L24; transcript_id = NM_173235.3 ’
Something similar occurs when running htseq-count.
Does anyone know how to solve?