# protein-ligand docking visualization using NGLViewer **URL:** \ **Category:** usegalaxy.eu support\ **Created:** [June 13, 2021, 3:42pm UTC](https://help.galaxyproject.org/t/protein-ligand-docking-visualization-using-nglviewer/6194 "2021-06-13T15:42:17Z")\ **Posts on this page:** 7\ **Page:** 1
**Author:** ![Vasishth\_Academy](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/vasishth_academy/32/2198_2.png) [@Vasishth\_Academy](https://help.galaxyproject.org/u/Vasishth_Academy)\ **Post date:** [June 13, 2021, 3:42pm UTC](https://help.galaxyproject.org/t/protein-ligand-docking-visualization-using-nglviewer/6194/1 "2021-06-13T15:42:17Z")
![activesite](https://us1.discourse-cdn.com/flex020/uploads/galaxy/original/2X/a/ab466baef7e398b08f51e22fd5b0923c3c5ee5aa.gif) Hello, I was following the tutorial at [Protein-ligand docking](https://training.galaxyproject.org/training-material/topics/computational-chemistry/tutorials/cheminformatics/tutorial.html). I am not able to visualize my results as per the tutorial and as per attachment using NGL Viewer. Can you please help me? regards Preenon Bagchi ---
**Author:** ![Vasishth\_Academy](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/vasishth_academy/32/2198_2.png) [@Vasishth\_Academy](https://help.galaxyproject.org/u/Vasishth_Academy)\ **Post date:** [June 15, 2021, 3:41pm UTC](https://help.galaxyproject.org/t/protein-ligand-docking-visualization-using-nglviewer/6194/2 "2021-06-15T15:41:19Z")
Hello, I was following the tutorial at [Protein-ligand docking](https://training.galaxyproject.org/training-material/topics/computational-chemistry/tutorials/cheminformatics/tutorial.html). I am not able to visualize my results as per the tutorial and as per attachment using NGL Viewer. Can you please help me? regards Preenon Bagchi ---
**Author:** ![simonbray](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/simonbray/32/1258_2.png) [@simonbray](https://help.galaxyproject.org/u/simonbray)\ **Post date:** [June 15, 2021, 4:17pm UTC](https://help.galaxyproject.org/t/protein-ligand-docking-visualization-using-nglviewer/6194/3 "2021-06-15T16:17:08Z")
Answered on gitter / matrix. ---
**Author:** ![simonbray](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/simonbray/32/1258_2.png) [@simonbray](https://help.galaxyproject.org/u/simonbray)\ **Post date:** [November 11, 2021, 1:25pm UTC](https://help.galaxyproject.org/t/protein-ligand-docking-visualization-using-nglviewer/6194/4 "2021-11-11T13:25:04Z")
Because it seems people are still reading this thread, this is what I wrote to Preenon: > we created that GIF by combining screenshots from two poses together > if you got as far as creating the PDB files for the docked poses, you can click on the `Visualize this data button` on the datasets in your history > then you have a choice of visualizations and you can pick NGLviewer ---
**Author:** ![TrongTran](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/trongtran/32/3022_2.png) [@TrongTran](https://help.galaxyproject.org/u/TrongTran)\ **Post date:** [January 5, 2022, 7:12am UTC](https://help.galaxyproject.org/t/protein-ligand-docking-visualization-using-nglviewer/6194/5 "2022-01-05T07:12:52Z")
Hi Simon, I am learning protein-ligand docking by following the galaxy training with Hsp90 as a model. I successfully obtained a list of docked ligands. However, I cannot visualize the interactions between those ligands and their receptor (Hsp90) by NGL Viewer. I tried to input the docking files to AutoDockTools (Analyze → Dockings → Show Interactions) but failed. It seems to me the output files obtained from Galaxy do not have any information about the interactions. Am I right? Are there any ways to compute the docking on Galaxy to have output files with protein-ligand interactions that can be visualized using AutoDockTools? I look forward to hearing from you. Many thanks, Trong Tran ---
**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\ **Post date:** [November 27, 2024, 5:18pm UTC](https://help.galaxyproject.org/t/protein-ligand-docking-visualization-using-nglviewer/6194/6 "2024-11-27T17:18:11Z")
Split this topic on November 27, 2024, 5:18pm UTC A post was split to a new topic: [Troubleshooting protein-ligand docking tutorial](https://help.galaxyproject.org/t/troubleshooting-protein-ligand-docking-tutorial/14011) ---
**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\ **Post date:** [November 27, 2024, 5:18pm UTC](https://help.galaxyproject.org/t/protein-ligand-docking-visualization-using-nglviewer/6194/7 "2024-11-27T17:18:25Z")
Closed on November 27, 2024, 5:18pm UTC