Reference sequence NCBI ID number

[Busrak]

Hi Dears, I processed my Pseudomonas Aeruginosa sequences with the reference sequence Pseudomonas Aeruginosa (str.PA7): 16720 on the Map with Bow Tie for Illumina tool.

I need the NCBI accession number of the reference sequences Pseudomonas Aeruginosa (str.PA7): 16720 on the Galaxy Au platform. Can you help me?

Also, Pseudomonas Aeruginosa reference sequence is not available in Map with BWA-MEM, can you add it?

[jennaj]

Hello @Busrak

This is where the index was sourced: Index of /indexes/microbes/16720/

• The accession is NC_009656.
• Inside the /seq directory is the fasta: pseuAeru_PA7.fa
• Add the fasta to a history (capture the URL and paste into the Upload tool) then use it as a custom reference genome with any tools that do not have it already indexed. How to use Custom Reference Genomes?