Dear Galaxy community,
I am trying to build database for Mycobacterium tuberculosis H37Rv using GFF annotation. I tried to use .fna and .gff files from ncbi but am getting following error:Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/jobdir/024/539/24539611/_job_tmp -Xmx7g -Xms256m
Exception in thread “main” java.lang.ArrayIndexOutOfBoundsException: 1
Is this something related to my computer or am I doing something wrong?
I also tried .fasta and .gff3 files but came back with the same result.
Alternatively, I tried to snpEff download and received following error message: Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/jobdir/024/539/24539793/_job_tmp -Xmx7g -Xms256m
00:00:00 SnpEff version SnpEff 4.3t (build 2017-11-24 10:18), by Pablo Cingolani
00:00:00 Command: ‘download’
00:00:00 Reading configuration fil
I wonder if anyone can help me get through this.