SSAKE in local Galaxy

1

Hello all,

I’ve installed SSAKE in a local Galaxy, but it doesn’t work. I received this message:
/bin/sh: 1: SSAKE: not found
Traceback (most recent call last):
File “/home/rpasa/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/crs4/ssake/f20db7280f89/ssake/ssake.py”, line 145, in
main()
File “/home/rpasa/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/crs4/ssake/f20db7280f89/ssake/ssake.py”, line 132, in main
execute(command)
File “/home/rpasa/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/crs4/ssake/f20db7280f89/ssake/ssake.py”, line 15, in execute
subprocess.check_call(args=cmd, stdout=open(os.devnull, ‘w’), shell=True)
File “/home/rpasa/miniconda2/envs/galaxy/lib/python2.7/subprocess.py”, line 190, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command ‘SSAKE -f /home/rpasa/galaxy/database/files/000/dataset_138.dat -w 1 -m 20 -o 2 -r 0.7 -h 1 -b ssake_pre -p 0’ returned non-zero exit status 127

Thanks!

1 Like
2

How did you install it?

3

I’ve use the instalation tool in the admin. There is two versions, I’ve tried both and the same problem.

P.S.: answering for another account because I create that one duplicated because I couldn’t remember if I already have an account! Sorry.

4

Directly in the tool management.

5

Did you make sure that the tools dependencies are installed? Check the tools status in the dependency manager section of the admin panel

1 Like