# Trinotate error resulting in "The job creating this dataset has been resubmitted" **URL:** \ **Category:** usegalaxy.eu support\ **Tags:** tool-deprecated\ **Created:** [June 11, 2021, 9:54pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187 "2021-06-11T21:54:26Z")\ **Posts on this page:** 13\ **Page:** 1
**Author:** ![jaredbernard](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jaredbernard/32/2595_2.png) [@jaredbernard](https://help.galaxyproject.org/u/jaredbernard)\ **Post date:** [June 11, 2021, 9:54pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/1 "2021-06-11T21:54:26Z")
I ran into this error when running Trinotate on Galaxy Europe: > The job creating this dataset has been resubmitted > > An error occurred with this dataset: > > This job was resubmitted to the queue because it encountered a tool detected error condition on its compute resource. memory memory memory memory \* Running CMD: wget "[ftp://ftp.uniprot.org/pub/databases/uniprot/current\_release/knowledgebase/complete/unipr](ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/unipr) Does this mean the job is running again, or do I need to resubmit? ---
**Author:** ![David](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/david/32/7031_2.png) [@David](https://help.galaxyproject.org/u/David)\ **Post date:** [June 12, 2021, 1:09am UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/2 "2021-06-12T01:09:23Z")
@jaredbernard You can see if the job is running by its color: [https://galaxyproject.org/support/how-jobs-execute/#dataset-states](https://galaxyproject.org/support/how-jobs-execute/#dataset-states) You can try rerun it. ---
**Author:** ![jaredbernard](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jaredbernard/32/2595_2.png) [@jaredbernard](https://help.galaxyproject.org/u/jaredbernard)\ **Post date:** [June 12, 2021, 4:59am UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/3 "2021-06-12T04:59:48Z")
Thanks, @David. The error message was red, but the phrasing made me think it was going to automatically rerun. Also I thought Galaxy Europe sometimes reran jobs that fail. But I waited several hours and it was not rerunning, so I started it again myself. I noticed a few others have posted this error for various tools, but no one specifically addressed what this error message means, so I thought it would be good if a help issue specifically asked the meaning of the message. ---
**Author:** ![David](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/david/32/7031_2.png) [@David](https://help.galaxyproject.org/u/David)\ **Post date:** [June 12, 2021, 3:08pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/4 "2021-06-12T15:08:59Z")
@jaredbernard, I agree. I’ve found a more direct answer from the [gitter / usegalaxy-eu/Lobby](https://gitter.im/usegalaxy-eu/Lobby?at=5d0a241326477710bbe7f7e1): > Helena Rasche @erasche jun 19 2019 09:01 > This means the job has failed, and we have automatically retried to run it with more memory. > If your jobs fail, please check the (i) information icon, and see the stderr or stdout, and if those do not tell you the issue, then please usethe bug report icon to submit errors Maybe this would be a more official answer for now ---
**Author:** ![jaredbernard](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jaredbernard/32/2595_2.png) [@jaredbernard](https://help.galaxyproject.org/u/jaredbernard)\ **Post date:** [June 12, 2021, 8:55pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/5 "2021-06-12T20:55:46Z")
Thanks for the answer @David and @erasche. Unfortunately, my restarted job ended with the same error message. ---
**Author:** ![David](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/david/32/7031_2.png) [@David](https://help.galaxyproject.org/u/David)\ **Post date:** [June 12, 2021, 9:43pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/6 "2021-06-12T21:43:30Z")
Any chance your input is not ok? ---
**Author:** ![jaredbernard](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jaredbernard/32/2595_2.png) [@jaredbernard](https://help.galaxyproject.org/u/jaredbernard)\ **Post date:** [June 12, 2021, 9:51pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/7 "2021-06-12T21:51:07Z")
I’ve wondered that, as a possibility. But I think it is okay. I’ve done things virtually identical to the workflow in this [de novo transcriptome assembly tutorial](https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/full-de-novo/tutorial.html#differential-expression-de-analysis) and [advice on this Galaxy Help page](https://help.galaxyproject.org/t/de-novo-assembly-using-trinity-in-galaxy/2760), but using my own data. ---
**Author:** ![David](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/david/32/7031_2.png) [@David](https://help.galaxyproject.org/u/David)\ **Post date:** [June 13, 2021, 2:04pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/8 "2021-06-13T14:04:50Z")
@jaredbernard Can you provide the full error text message and the bug text? > [@jaredbernard](#): > > "[ftp://ftp.uniprot.org/pub/databases/uniprot/current\_release/knowledgebase/complete/unipr](ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/unipr) Maybe it is similar to what happened here: > [@Trinotate running Error](https://help.galaxyproject.org/t/trinotate-running-error/5890): > > I was running Trinotate and got error as like this Error, cannot locate version database file. Be sure it’s in your current directory. at /cvmfs/main.galaxyproject.org/deps/\_conda/envs/mulled-v1-d301214ea0391aec86b2f63c2c1ac14ef0598be5ae4d143b7405cc0414beaa71/bin/Trinotate line 53. The error that occurred during the download of pfam2go database Running CMD: wget “[ftp://ftp.geneontology.org/pub/go/external2go/pfam2go](ftp://ftp.geneontology.org/pub/go/external2go/pfam2go)” –2021-04-27 05:21:06-- [ftp://ftp.geneontology.org/pub/go/external2go/pf…](ftp://ftp.geneontology.org/pub/go/external2go/pfam2go) ---
**Author:** ![jaredbernard](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jaredbernard/32/2595_2.png) [@jaredbernard](https://help.galaxyproject.org/u/jaredbernard)\ **Post date:** [June 13, 2021, 6:12pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/9 "2021-06-13T18:12:00Z")
Thanks for looking into this, @David. The message in my first post was my whole error message. Under Tool Standard Error, the message is: > Error, cmd: wget “[ftp://ftp.geneontology.org/pub/go/external2go/pfam2go](ftp://ftp.geneontology.org/pub/go/external2go/pfam2go)” died with ret 1024 at /usr/local/tools/\_conda/envs/mulled-v1-d301214ea0391aec86b2f63c2c1ac14ef0598be5ae4d143b7405cc0414beaa71/lib/site\_perl/5.26.2/Pipeliner.pm line 102. > Pipeliner::run(Pipeliner=HASH(0x55d0b25ea838)) called at /usr/local/tools/\_conda/envs/mulled-v1-d301214ea0391aec86b2f63c2c1ac14ef0598be5ae4d143b7405cc0414beaa71/bin/Build\_Trinotate\_Boilerplate\_SQLite\_db.pl line 120 ---
**Author:** ![melisa123](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/melisa123/32/2687_2.png) [@melisa123](https://help.galaxyproject.org/u/melisa123)\ **Post date:** [August 11, 2021, 2:22pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/10 "2021-08-11T14:22:22Z")
Hi there, I’m having a similar error: Error, cmd: wget “[ftp://ftp.geneontology.org/pub/go/external2go/pfam2go](ftp://ftp.geneontology.org/pub/go/external2go/pfam2go)” died with ret 1024 at /usr/local/tools/\_conda/envs/mulled-v1-d301214ea0391aec86b2f63c2c1ac14ef0598be5ae4d143b7405cc0414beaa71/lib/site\_perl/5.26.2/Pipeliner.pm line 102. Did you find any solution? ---
**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\ **Post date:** [August 11, 2021, 6:01pm UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/11 "2021-08-11T18:01:15Z")
**Update** Issue ticket: [Bug: Trinotate (Galaxy Version 3.2.1) · Issue #3875 · galaxyproject/tools-iuc · GitHub](https://github.com/galaxyproject/tools-iuc/issues/3875) * * * HI @melisa123 This looks like an actual bug. Specifically, the environment created for the job is failing to retrieve one of the required inputs (from a 3rd party’s site). You are working at [UseGalaxy.eu](http://UseGalaxy.eu), correct? If so, please submit your error as a bug report and include a link to this topic at Galaxy Help in the comments. Both provide technical context. Step 4 here explains how: [Troubleshooting errors](https://training.galaxyproject.org/training-material/faqs/galaxy/analysis_troubleshooting.html) ---
**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\ **Post date:** [April 8, 2026, 2:10am UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/12 "2026-04-08T02:10:49Z")
The tool has been deprecated by the authors and is no longer available! For ideas about alternatives, try [Search results for 'trinotate' - Galaxy Community Help](https://help.galaxyproject.org/search?q=trinotate) or see our Transcriptomics tutorials 🎓 [Transcriptomics / Tutorial List](https://galaxyproject.github.io/training-material/topics/transcriptomics/). For adventurous hosting on **your own server** , please see [Trinotate SQLite boilerplate unavailable on usegalaxy.eu?](https://help.galaxyproject.org/t/trinotate-sqlite-boilerplate-unavailable-on-usegalaxy-eu/15953). ---
**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\ **Post date:** [April 8, 2026, 2:15am UTC](https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/13 "2026-04-08T02:15:09Z")