# Unicycler launched but still queued after 2 days

**URL:** <https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641>\
**Category:** usegalaxy.org support\
**Tags:** assembly, unicycler, server-side-delay\
**Created:** [December 11, 2019, 8:30pm UTC](https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641 "2019-12-11T20:30:23Z")\
**Posts on this page:** 7\
**Page:** 1

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**Author:** ![vanina.guernier](https://avatars.discourse-cdn.com/v4/letter/v/839c29/32.png) [@vanina.guernier](https://help.galaxyproject.org/u/vanina.guernier)\
**Post date:** [December 11, 2019, 8:30pm UTC](https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641/1 "2019-12-11T20:30:23Z")

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Hi, I launched a few assembly analyses with Unicycler on Monday and they are still queued (in grey).  
The ones I did last week took no more than 2 hours, so I’m starting to wonder if there is an issue here or a maintenance that prevents the analyses to keep going?  
Of note, I have been running other analyses (with QUAST) and they completed in minutes.  
Thanks  
Vanina

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [December 12, 2019, 5:17pm UTC](https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641/2 "2019-12-12T17:17:03Z")

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Hi @vanina.guernier

To confirm, you are working at Galaxy Main [https://usegalaxy.org](https://usegalaxy.org)?

We have had recent reports of delays for both `Trinity` and `Unicycler` now at this server. More feedback about that soon.

Meanwhile, please leave queued jobs queued. If you delete and rerun, the job will move back to the end of the queue, extending wait time.

Thanks for reporting the problem.

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**Author:** ![vanina.guernier](https://avatars.discourse-cdn.com/v4/letter/v/839c29/32.png) [@vanina.guernier](https://help.galaxyproject.org/u/vanina.guernier)\
**Post date:** [December 12, 2019, 5:18pm UTC](https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641/3 "2019-12-12T17:18:55Z")

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> [@jennaj](#):
>
> To confirm, you are working at Galaxy Main [https://usegalaxy.org](https://usegalaxy.org)?

Yes I am. Everything else but Unicycler seems to work, it’s been 3 days now.  
I won’t delete anything, Thanks

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [December 12, 2019, 5:23pm UTC](https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641/4 "2019-12-12T17:23:47Z")

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**Update:**

Thanks for the clarification. The jobs were delayed by a server-side issue that was just now corrected.

Please do allow queued jobs to remain queued and they will eventually process.

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**Author:** ![vanina.guernier](https://avatars.discourse-cdn.com/v4/letter/v/839c29/32.png) [@vanina.guernier](https://help.galaxyproject.org/u/vanina.guernier)\
**Post date:** [December 12, 2019, 10:45pm UTC](https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641/5 "2019-12-12T22:45:09Z")

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It seems that all the jobs with Unicycler are now finished, except most of them failed (in red).  
Do you think it is a real failure, or I should launch again the ones who failed, in case this is related to the delay in being processed?  
Thanks

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [December 13, 2019, 5:48pm UTC](https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641/6 "2019-12-13T17:48:45Z")

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@vanina.guernier Please try a rerun. For any job failure, at least one rerun is recommended to eliminate cluster issues.

If those fail, then check the error messages and the inputs. There might be a problem that could be fixed, or the data could be too large to execute on the public server.

This FAQ helps with identifying and addressing the most common data input problems that lead to tool errors:

- [My job ended with an error. What can I do?](https://galaxyproject.org/support/tool-error/)

More comprehensive help, including links to GTN tutorials, is here. `Unicycler` is covered in a GTN tutorial under the topic “Assembly”.

> [@Troubleshooting resources for errors or unexpected results](https://help.galaxyproject.org/t/troubleshooting-resources-for-errors-or-unexpected-results/42):
>
> Check to see if there is a known usegalaxy.\* server issue. Server Status: [https://status.galaxyproject.org/](https://status.galaxyproject.org/) If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate transient server issues too short in duration to trigger a statuspage warning. Next, start by reviewing the troubleshooting FAQ. Common reasons and solutions for tool errors are explained. Most job errors can be resolved by correcting your input data’s format/content. Others indica…

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**Author:** ![jennaj](https://sea2.discourse-cdn.com/flex020/user_avatar/help.galaxyproject.org/jennaj/32/27_2.png) [@jennaj](https://help.galaxyproject.org/u/jennaj)\
**Post date:** [February 10, 2023, 8:20pm UTC](https://help.galaxyproject.org/t/unicycler-launched-but-still-queued-after-2-days/2641/7 "2023-02-10T20:20:29Z")

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