Hi @Busrak
Overall, the screenshot is showing that none of the data in the files “overlaps” with the genome coordinates. Looking closer, it seems the NC accession sequence used for the genomic sequence is a mismatch for the NC accession sequence the data is based on.
Different accession sequences will use different coordinate systems, which probably explains what is going on. Try viewing the data against the NC accession sequence used for all the other steps. You already have a copy of that, correct? See Reference sequence NCBI ID number - #2 by jennaj
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