Topics tagged assembly

Topic	Replies	Views	Activity
SPAdes assembly assembly , spades , queued-gray-datasets	2	493	March 29, 2023
Roary troubleshooting (version 3.13.0+galaxy2 or later) assembly , blast	3	1048	March 23, 2023
roary core genome alignment file is empty. (resolved) usegalaxy.org support assembly , blast	12	2124	March 7, 2023
bacterial genome assembly workflow usegalaxy.org support gtn-tutorial , assembly	1	479	February 21, 2023
VGP busco troubleshooting usegalaxy.org support gtn-tutorial , assembly , server-open-issue	3	592	February 14, 2023
SPAdes/Unicycler assembly failures -- Resolved usegalaxy.org support assembly , unicycler , spades	14	5744	February 10, 2023
Obtaining consensus sequence from aligned sequences assembly	1	2220	January 26, 2023
Unicycler doesn't combine two datasets usegalaxy.eu support assembly , troubleshooting , fastqsanger , single-cell	3	388	January 13, 2023
Racon/minimap2 error usegalaxy.eu support assembly	5	915	February 10, 2023
fastq file not accepted in minimap2 self-mapping mode usegalaxy.eu support assembly , fastqsanger	3	682	October 18, 2022
Any tools to merge two de novo genomic assemblies? usegalaxy.eu support workflow , assembly , vgp	4	962	September 23, 2022
Assembly with SPADES / metaSPADES assembly , server-side-error , usinggalaxy	2	998	June 27, 2022
An error of Trinity de novo assembly of RNA-seq data -- Disabled tool, use RNA-Spades instead usegalaxy.org support assembly , transcriptomics , tool-deprecated , fastqsanger , rnaspades	5	603	July 23, 2022
De Novo Assembly from Nanopore Reads usegalaxy.org support assembly	2	382	September 21, 2022
Q: Error encounter during Genome assembly using SPAdes tool. A: Tool requires intact paired-end reads as an input. usegalaxy.org support assembly , quality-control	6	4275	September 23, 2022
Trinity and reads "smaller than 25 base pairs" Resources assembly , troubleshooting , exceeds-memory-error , resources , tool-help , quality-control , trinity	2	701	December 20, 2023
Trinity queued for long usegalaxy.eu support assembly , transcriptomics , queued-gray-datasets	1	410	April 19, 2022
Issue in SARS-COV2 Genome Assembly using SPAdes in usegalaxy.org usegalaxy.org support assembly , spades	3	480	December 21, 2023
How is genome coverage / depth is determined? assembly	4	1367	January 29, 2022
Long Job using Flye and quota usage disappeared usegalaxy.eu support assembly , fastqsanger , funannotate	15	1194	January 23, 2022
"An error occurred while updating information with the server" repeatedly while running Pilon usegalaxy.org support assembly , troubleshooting	1	810	January 21, 2022
Filtering out non-target organism reads before assembly usegalaxy.org support assembly , mapping	3	788	February 10, 2023
query sequence to new custom genomic scaffold usegalaxy.org support assembly , igv	4	650	February 10, 2023
waiting to run trinity usegalaxy.org support assembly , transcriptomics	0	545	November 24, 2021
Cannot find Trinity Statistics Tool assembly , transcriptomics , statistics	0	403	November 4, 2021
Error in de novo assembly of RNAseq using Trinity usegalaxy.org support assembly , troubleshooting	9	1422	December 20, 2023
I cannot figure out what to do with Fastq files that are already paired assembly , single-cell , variant-analysis	10	1594	September 30, 2021
Disk quota error occurring with paired-end Trinity assembly -- Sept 22 2021 = Resolved usegalaxy.org support assembly , troubleshooting	9	1052	December 20, 2023
How to close contigs file into one big contig usegalaxy.org support assembly	0	474	August 12, 2021
BUSCO analysis only shows the full table without a short summary usegalaxy.eu support assembly , genome-annotation	2	686	June 11, 2021