|
Roary troubleshooting (version 3.13.0+galaxy2 or later)
|
|
3
|
1041
|
March 23, 2023
|
|
roary core genome alignment file is empty. (resolved)
|
|
12
|
2117
|
March 7, 2023
|
|
bacterial genome assembly workflow
|
|
1
|
477
|
February 21, 2023
|
|
VGP busco troubleshooting
|
|
3
|
592
|
February 14, 2023
|
|
SPAdes/Unicycler assembly failures -- Resolved
|
|
14
|
5728
|
February 10, 2023
|
|
Obtaining consensus sequence from aligned sequences
|
|
1
|
2205
|
January 26, 2023
|
|
Unicycler doesn't combine two datasets
|
|
3
|
388
|
January 13, 2023
|
|
Racon/minimap2 error
|
|
5
|
912
|
February 10, 2023
|
|
fastq file not accepted in minimap2 self-mapping mode
|
|
3
|
680
|
October 18, 2022
|
|
Any tools to merge two de novo genomic assemblies?
|
|
4
|
958
|
September 23, 2022
|
|
assembly with SPADES / metaSPADES
|
|
2
|
998
|
June 27, 2022
|
|
An error of Trinity de novo assembly of RNA-seq data -- Disabled tool, use RNA-Spades instead
|
|
5
|
598
|
July 23, 2022
|
|
De Novo Assembly from Nanopore Reads
|
|
2
|
382
|
September 21, 2022
|
|
Q: Error encounter during Genome assembly using SPAdes tool. A: Tool requires intact paired-end reads as an input.
|
|
6
|
4272
|
September 23, 2022
|
|
Trinity and reads "smaller than 25 base pairs"
|
|
2
|
701
|
December 20, 2023
|
|
Trinity queued for long
|
|
1
|
410
|
April 19, 2022
|
|
Issue in SARS-COV2 Genome Assembly using SPAdes in usegalaxy.org
|
|
3
|
480
|
December 21, 2023
|
|
How is genome coverage / depth is determined?
|
|
4
|
1355
|
January 29, 2022
|
|
Long Job using Flye and quota usage disappeared
|
|
15
|
1186
|
January 23, 2022
|
|
"An error occurred while updating information with the server" repeatedly while running Pilon
|
|
1
|
810
|
January 21, 2022
|
|
Filtering out non-target organism reads before assembly
|
|
3
|
780
|
February 10, 2023
|
|
query sequence to new custom genomic scaffold
|
|
4
|
648
|
February 10, 2023
|
|
waiting to run trinity
|
|
0
|
545
|
November 24, 2021
|
|
Cannot find Trinity Statistics Tool
|
|
0
|
402
|
November 4, 2021
|
|
Error in de novo assembly of RNAseq using Trinity
|
|
9
|
1418
|
December 20, 2023
|
|
I cannot figure out what to do with Fastq files that are already paired
|
|
10
|
1593
|
September 30, 2021
|
|
Disk quota error occurring with paired-end Trinity assembly -- Sept 22 2021 = Resolved
|
|
9
|
1044
|
December 20, 2023
|
|
How to close contigs file into one big contig
|
|
0
|
474
|
August 12, 2021
|
|
BUSCO analysis only shows the full table without a short summary
|
|
2
|
684
|
June 11, 2021
|
|
Troubleshooting Trinity inputs + QA/QC steps for RNA-seq assembly
|
|
6
|
1560
|
December 21, 2023
|