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Troubleshooting Trinity inputs + QA/QC steps for RNA-seq assembly
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6
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1566
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December 21, 2023
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Trinity assembly runtimes and resources
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11
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1460
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November 30, 2021
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de novo assembly using Trinity in Galaxy
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7
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5991
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February 25, 2020
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What Galaxy instance has a gap filling tools?
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2
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499
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May 24, 2021
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Flye Asembly limits
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1
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1084
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April 28, 2021
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Racon polishing after Canu
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2
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813
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January 20, 2021
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error message when doing de novo assembly
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2
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653
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February 10, 2023
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Prokka error: [tbl2asn] This copy of tbl2asn is more than a year old. Please download the current version
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4
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1521
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December 13, 2020
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To convert String tie GTF file to FASTA file
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1
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2312
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November 20, 2020
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Trinity error: Remote job server indicated a problem running or monitoring this job
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7
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1243
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October 22, 2020
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Bacterial genome assembly
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1
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820
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August 26, 2020
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Problems assembling reads with Trinity
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4
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709
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December 21, 2023
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Keep getting an error when trying to use CANU assembler with Oxford Nanopore reads
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7
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1760
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July 20, 2020
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Missing output, but no error in IDBA-TRAN
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0
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499
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July 21, 2020
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HELP with Unicycler. I keep getting the error "Remote job server indicated a problem running or monitoring this job"
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2
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749
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July 10, 2020
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Trinity align reads and estimate abundance Fatal Error
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6
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2164
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December 21, 2023
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Genome-guided Trinity without FASTQ
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4
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823
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March 17, 2026
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Splitting interleaved/interlaced fastq data and Extracting fastq data from an sra archive
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9
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3400
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February 10, 2023
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Roary - Fatal error: Exit code 2 ()
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2
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2467
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March 27, 2020
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Error: differential expression -- Issues with older Trinity tools and tutorials
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3
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853
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March 25, 2020
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Genes to transcript file for building expression matrix/ DEseq2/ edgeR differential expression
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8
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1548
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March 17, 2026
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Missing tool "velveth and velvetg"
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6
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860
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December 21, 2023
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How to generate Nanopore fastq collection files for Unicycler?
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2
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986
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December 20, 2019
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Unicycler launched but still queued after 2 days
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6
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1019
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February 10, 2023
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Unable to start Trinity assembly
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2
|
582
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December 12, 2019
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Nanopore data assembly with CANU
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4
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2143
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July 11, 2019
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Prokka - gbk file misalign in txt file -- Data is in NCBI's gbk format
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4
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1062
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June 26, 2019
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Generating consensus sequence from bam file re: Variant analysis
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1
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1234
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June 20, 2019
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Help With Choice of Nanopore Sequence Data Analysis Tools
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0
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1093
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May 5, 2019
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Disappear Velvet tool
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3
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1050
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February 10, 2023
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