Topics tagged atac-seq

Topic	Replies	Views	Activity
ATAC-Seq Analysis Using MACS2 Callpeak usegalaxy.org support gtn-tutorial , atac-seq	1	10	November 12, 2024
Input Custom Reference Genome into Workflow workflow , reference-genome , atac-seq	2	24	August 7, 2024
Single cell ATAC-Seq possible? usegalaxy.org support atac-seq	2	441	December 19, 2023
How to do differential expression analysis on ATAC-SEQ atac-seq , rstudio	1	379	June 14, 2023
single-cell-ATAC analysis platform gtn-tutorial , atac-seq	4	552	February 10, 2023
ATAC-Seq TSS-enrichment-Score usegalaxy.eu support atac-seq	0	421	November 7, 2021
What advanced parameters which need to be set for analysing ATAC seq replicates using edgeR in usegalaxy.org ? usegalaxy.org support gtn-tutorial , workflow , transcriptomics , atac-seq , edger	1	516	September 13, 2021
We did our analysis using edgeR and we got many gene but when we used Diffbind we got less no of chromosome regions ? usegalaxy.org support workflow , galaxy-local , macs2 , transcriptomics , atac-seq , edger	1	715	September 13, 2021
Not able to filter out my edgeR gene results when I put filter on column 6 for FDR<0.05 .It shows no results and al the values in the FDR column are greater than 0.3.Is there a problem with the parameters I had set for edgeR? usegalaxy.org support gtn-tutorial , workflow , galaxy-local , transcriptomics , collections , atac-seq , edger	0	439	September 10, 2021
How to get gene list from fasta sequence file. usegalaxy.org support gtn-tutorial , workflow , chip-seq , atac-seq , epigenetics	1	884	September 10, 2021
Genrich error - ATAC-seq analysis atac-seq	1	548	March 16, 2021
Normalization of ATACseq data usegalaxy.eu support atac-seq	1	894	June 11, 2020
ATAC-seq insertsize metrics atac-seq	2	689	October 3, 2019
ATAC-seq analysis and tutorial gtn-tutorial , atac-seq	12	3118	September 26, 2019
ATAC-seq macs2 peak splitting in sliding windows gtn-tutorial , macs2 , atac-seq	1	965	September 13, 2019
ATAC-seq analysis gtn-tutorial , atac-seq	1	1410	September 13, 2019