Topics tagged atac-seq

Topic	Replies	Views	Activity
How to do differential expression analysis on ATAC-SEQ atac-seq , rstudio	1	134	June 14, 2023
single-cell-ATAC analysis platform tutorial , atac-seq	4	442	February 10, 2023
ATAC-Seq TSS-enrichment-Score usegalaxy.eu support atac-seq	0	332	November 7, 2021
What advanced parameters which need to be set for analysing ATAC seq replicates using edgeR in usegalaxy.org ? usegalaxy.org support rna-seq , tutorial , workflow , atac-seq	1	399	September 13, 2021
We did our analysis using edgeR and we got many gene but when we used Diffbind we got less no of chromosome regions ? usegalaxy.org support workflow , galaxy-local , macs2 , edger , atac-seq	1	464	September 13, 2021
Not able to filter out my edgeR gene results when I put filter on column 6 for FDR<0.05 .It shows no results and al the values in the FDR column are greater than 0.3.Is there a problem with the parameters I had set for edgeR? usegalaxy.org support tutorial , workflow , dataset-collection , galaxy-local , atac-seq	0	228	September 10, 2021
How to get gene list from fasta sequence file. usegalaxy.org support tutorial , workflow , chip-seq , atac-seq	1	569	September 10, 2021
Genrich error - ATAC-seq analysis atac-seq	1	405	March 16, 2021
Normalization of ATACseq data usegalaxy.eu support atac-seq	1	712	June 11, 2020
ATAC-seq insertsize metrics atac-seq	2	506	October 3, 2019
ATAC-seq analysis and tutorial tutorial , atac-seq	12	2436	September 26, 2019
ATAC-seq macs2 peak splitting in sliding windows tutorial , atac-seq	1	733	September 13, 2019
ATAC-seq analysis tutorial , atac-seq	1	1124	September 13, 2019