atac-seq

Topic Replies Views Activity
single-cell-ATAC analysis platform
tutorial ,  atac-seq
1 53 September 20, 2021
What advanced parameters which need to be set for analysing ATAC seq replicates using edgeR in usegalaxy.org ?
usegalaxy.org support
rna-seq ,  tutorial ,  workflow ,  atac-seq
1 50 September 13, 2021
We did our analysis using edgeR and we got many gene but when we used Diffbind we got less no of chromosome regions ?
usegalaxy.org support
workflow ,  galaxy-local ,  macs2 ,  edger ,  atac-seq
1 62 September 13, 2021
Not able to filter out my edgeR gene results when I put filter on column 6 for FDR<0.05 .It shows no results and al the values in the FDR column are greater than 0.3.Is there a problem with the parameters I had set for edgeR?
usegalaxy.org support
tutorial ,  workflow ,  dataset-collection ,  galaxy-local ,  atac-seq
0 33 September 10, 2021
How to get gene list from fasta sequence file.
usegalaxy.org support
tutorial ,  workflow ,  chip-seq ,  atac-seq
1 57 September 10, 2021
Genrich error - ATAC-seq analysis
atac-seq
1 77 March 16, 2021
Normalization of ATACseq data
usegalaxy.eu support
atac-seq
1 297 June 11, 2020
ATAC-seq insertsize metrics
atac-seq
2 218 October 3, 2019
ATAC-seq analysis and tutorial
tutorial ,  atac-seq
12 1498 September 26, 2019
ATAC-seq macs2 peak splitting in sliding windows
tutorial ,  atac-seq
1 349 September 13, 2019
ATAC-seq analysis
tutorial ,  atac-seq
1 671 September 13, 2019