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Unable to view bams via igb nor igv
|
|
1
|
142
|
August 6, 2021
|
|
Get bai file generated by galaxy in tool xml?
|
|
1
|
99
|
August 2, 2021
|
|
"merging BAM files from within a list of datasets"
|
|
2
|
157
|
July 2, 2021
|
|
what tools approprite for remove duplicate reads from BAM file in Usegalaxy
|
|
3
|
221
|
April 19, 2021
|
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Visualize bwa mem on IGV or IGB
|
|
0
|
163
|
March 13, 2021
|
|
hg19 as reference produce bad ordered bams
|
|
2
|
121
|
February 22, 2021
|
|
Can't merge bam output from RNA-star
|
|
3
|
125
|
February 11, 2021
|
|
Compare variants between RNA-seq libraries
|
|
1
|
156
|
February 2, 2021
|
|
Could Galaxy/HicExplorer includes samtools for bam files merge?
|
|
2
|
120
|
January 28, 2021
|
|
Confirm bwa-mem mapping
|
|
4
|
169
|
January 21, 2021
|
|
Samtool merge error after HISAT2
|
|
7
|
976
|
August 3, 2020
|
|
Cannot download bam csi index with HISAT2 or RNA STAR
|
|
2
|
206
|
July 28, 2020
|
|
Hisat2 BAM file output does not include stats -- Not a default output but is an option on the tool form
|
|
3
|
467
|
June 16, 2020
|
|
Filter SAM or BAM, output SAM or BAM files
|
|
1
|
385
|
May 26, 2020
|
|
How to subset a BAM by specific name?
|
|
2
|
249
|
May 25, 2020
|
|
Samtools merge error
|
|
3
|
832
|
March 16, 2020
|
|
Is there any path to convert TAB to BAM ?
|
|
1
|
266
|
January 10, 2020
|
|
Difficulty in getting SRA into Galalxy
|
|
6
|
1196
|
December 18, 2019
|
|
Missing bam index when downloading bam file
|
|
2
|
403
|
November 8, 2019
|
|
feature counts built-in genome not available
|
|
1
|
223
|
September 16, 2019
|
|
How to interpret and generate statistics for any dataset, including BAM or SAM or Tabular data
|
|
2
|
1391
|
June 12, 2019
|
|
How to extract unique reads from SAM file
|
|
1
|
769
|
May 29, 2019
|
|
'Bam to fastq' programs on Windows ?
|
|
2
|
314
|
May 21, 2019
|
|
Picard MergeSamFiles: Fatal error: Exit code 1 () merge SAM
|
|
3
|
531
|
March 7, 2019
|
|
Problem with visualize bam file in IGV
|
|
2
|
513
|
March 4, 2019
|
|
Problems mapping with HISAT2 & BOWTIE2
|
|
4
|
1309
|
February 28, 2019
|
|
Bam file to fasta file - Genome assembly
|
|
3
|
2074
|
February 6, 2019
|
|
Bowtie2 parameters for stringent alignment
|
|
15
|
3265
|
February 5, 2019
|
|
FTP Upload stops after 70G
|
|
3
|
575
|
January 22, 2019
|
|
Old bam files not running in GATK or deeptools after moving files to new server
|
|
2
|
277
|
December 14, 2018
|
