Galaxy Community Help
collections
Topic
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Why collections?
Resources
news
,
dataset
,
collections
,
resources
Collections are one of the super-killer features of Galaxy! By Anton Nekrutenko October 21, 2025
2
11
October 21, 2025
FASTQ Paired Reads Splitter?
collections
,
datasets
3
14
October 22, 2025
Kraken2 error message on paired-end collection. Not analyzing all samples
usegalaxy.eu support
troubleshooting
,
collections
3
15
October 14, 2025
Panaroo & PanTA: sample recognition troubleshooting
usegalaxy.eu support
collections
,
tool-help
4
26
October 8, 2025
Why can’t separate files be used in FASTP? Creating a paired end collection folder (data shapes and organization)
usegalaxy.org support
collections
,
fastp
5
18
October 1, 2025
Collection folder VIDEO: How to create a single or paired end dataset collection folder (shapes and organization)
Resources
collections
,
resources
,
tool-help
,
metawrapmg_binning
3
20
September 29, 2025
How do I use galaxy tools to create a paired end collection folder (data shapes and organization)
Resources
collections
,
resources
2
49
December 3, 2024
Collection to separate files
usegalaxy.eu support
collections
1
5
September 22, 2025
Creating folders/segregate files
usegalaxy.org support
history
,
collections
3
18
September 3, 2025
Alleyoop - unable to select dataset collections for bam, tsv, and vcf files
collections
,
browse-upload-files
3
14
August 5, 2025
Concatenate multiple datasets tool; combining all fastq.gz files under a single barcode to one fastq.gz file
collections
,
tool-help
6
165
July 22, 2025
Random failures when concatenating fastqsanger.gz datasets via collection– "Not in GZIP format" errors
usegalaxy.org support
collections
3
17
July 22, 2025
How can I rename a paired Fastq file?
Resources
collections
,
resources
,
fastq_manipulation
4
45
June 24, 2025
Extract dataset
history
,
collections
,
tool-help
,
__extract_dataset__
1
9
June 12, 2025
Format issues while trying yo use rnaviralspades
usegalaxy.eu support
collections
,
tool-help
,
spades_rnaviralspades
2
16
June 11, 2025
uploading metadata file
usegalaxy.eu support
transcriptomics
,
collections
,
__apply_rules__
,
upload-rule-based
2
13
May 22, 2025
Map with BWA-MEM
usegalaxy.eu support
bwa-mem
,
collections
1
20
May 12, 2025
My collection displays as a python object, not files paths
tool-dev
,
collections
2
11
April 29, 2025
Build dataset list
usegalaxy.org.au support
gtn-tutorial
,
collections
6
56
April 22, 2025
Need help flattening collections!
usegalaxy.eu support
collections
2
23
April 11, 2025
Fastp - Collection
usegalaxy.eu support
collections
,
fastp
1
21
March 28, 2025
Is there a way to merge collections with different structures? Or merge collections inside a list?
usegalaxy.eu support
collections
,
merge-collections
13
69
March 26, 2025
Quality Control Start Here! multQC issue and guidance?
Resources
multiqc
,
troubleshooting
,
collections
,
resources
,
quality-control
,
fastqc
1
89
March 3, 2025
OrthoFinder not accepting FASTA collections?
usegalaxy.eu support
workflow
,
collections
2
50
February 27, 2025
De-multiplex paired-end reads
usegalaxy.org support
collections
,
tool-help
,
__apply_rules__
1
30
October 30, 2024
.fastq.gz dataset not showing up in fastqc
usegalaxy.eu support
collections
4
89
October 30, 2024
plotCoverage bin count names
usegalaxy.org support
relabel-collection
,
collections
,
tool-help
2
20
October 29, 2024
Create a collection from a tabular file
usegalaxy.org support
workflow
,
text-manipulation
,
collections
2
28
October 28, 2024
MultiQC not working correctly
multiqc
,
collections
,
quality-control
10
2571
July 9, 2024
Multiple files after demultiplexing using radtags - what files do I use for mapping/SNP calling etc.,?
usegalaxy.eu support
mapping
,
stacks
,
collections
1
171
June 6, 2024
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