Topics tagged comp-chemistry

Topic	Replies	Views	Activity
Empty Output folder - Vina Docking usegalaxy.eu support comp-chemistry , tool-help , prepare_receptor , autodock_vina , prepare_box , docking , prepare_ligands_for_docking , prepare_ligand	5	33	October 21, 2025
Free energy landsape using Bio3d in galaxy Resources comp-chemistry , tool-help , bio3d_pca	5	58	August 18, 2025
CHARMM36 force field for gromacs tool-dev , comp-chemistry	2	48	August 12, 2025
Error in GROMACS solvation and ading ions gtn-tutorial , comp-chemistry , gromacs	1	52	October 15, 2024
Cannot analyze MD simulation using GROMACS - error 127 usegalaxy.org support gtn-tutorial , comp-chemistry	2	495	September 15, 2023
Generate a topology for the ligand comp-chemistry	10	604	August 7, 2023
Group Protein_UNK referenced in the .mdp file was not found in the index file. comp-chemistry	1	951	April 1, 2023
error due to time limit comp-chemistry	4	717	December 20, 2023
Merge Gromacs Topologies tool not found? usegalaxy.eu support comp-chemistry	5	883	September 23, 2022
To run longer simulation like 100ns usegalaxy.eu support gtn-tutorial , comp-chemistry	2	359	September 23, 2022
Free Energy Calculation from DCD Trajectory? usegalaxy.eu support comp-chemistry	1	653	September 21, 2022
Position restraints error !!! usegalaxy.eu support gtn-tutorial , comp-chemistry	6	980	August 31, 2022
Error when trying to use GROMACS on PDB of Protein-Protein Complex usegalaxy.eu support comp-chemistry	4	908	March 21, 2022
Tool error in protein-ligand md simulation in Gromacs usegalaxy.eu support comp-chemistry , usegalaxy-fr	13	2476	September 6, 2021