Topics tagged custom-build

Topic	Replies	Views	Activity
Reference genome not in database offered by galaxy - Solution: Use a custom genome usegalaxy.org support fasta , custom-genome , ftp-upload , custom-build	7	106	December 7, 2021
How to do Augustus training or Maker training? usegalaxy.eu support tutorial , workflow , dataset-collection , custom-build	23	458	September 12, 2021
Reference geneome usegalaxy.org support fasta , custom-genome , custom-build	1	133	August 10, 2021
Setting a custom database input for tools -- in a workflow or on a tool form workflow , data-manager , igv , cvmfs , custom-build	8	149	June 23, 2021
Mapping to a uploaded (large) reference genome dataset -- Platform Choices usegalaxy.org support custom-genome , cloudman , gvl , reference-genome , custom-build	14	321	June 9, 2021
Very long running time for RepeatMasker? usegalaxy.eu support workflow , custom-genome , custom-build , genome-annotation	9	144	May 21, 2021
Error in Naive Variant Caller (NVC) in usegalaxy.org -- Resolved usegalaxy.org support variant , database , custom-genome , usegalaxy , custom-build	7	209	February 15, 2021
Extract Genomic DNA Invalid Lines Error usegalaxy.org support bed , custom-genome , input , tabular , custom-build	6	273	January 22, 2021
Please add the Xenopus laevis reference genome to Galaxy -- Indexing already planned, use a Custom Genome/Build for now usegalaxy.org support custom-genome , hisat2 , reference-genome , custom-build	6	318	December 18, 2020
Uploading A. thaliana reference genome to RNA STAR usegalaxy.org support custom-genome , input , reference-annotation , reference-genome , custom-build	1	157	November 30, 2020
Alternative to DM tools for inbuilt reference sequence usegalaxy.eu support database , custom-genome , data-manager , custom-build	3	288	November 30, 2020
RNA Star alignment to opposum monDom5 genome usegalaxy.org support custom-genome , reference-annotation , reference-genome , custom-build	1	166	November 10, 2020
Request for including 2x fungal genomes in the GALAXY reference genome list usegalaxy.eu support custom-genome , reference-genome , custom-build	2	215	October 29, 2020
Another STAR error -- Resolved usegalaxy.org support custom-genome , reference-annotation , gtf , rna-star , custom-build	8	702	October 2, 2020
Mitochondrial genome usegalaxy.eu support admin , custom-genome , custom-build	4	288	September 20, 2020
Extracting sequences from bed file using tools extract Genomic DNA tool and bed to Fasta tool usegalaxy.org support fasta , metadata , custom-genome , bedtools , custom-build	3	727	June 30, 2020
HISAT2 and job stages, resources, PLAZA genomes, avoiding deprecated tools usegalaxy.org support custom-genome , tool-deprecated , hisat2 , custom-build , plaza	1	186	May 19, 2020
Why are there no available reference genomes in RNA-STAR? usegalaxy.org support custom-genome , rna-star , custom-build	3	591	May 1, 2020
how to index the Tetrahymena genome? custom-genome , custom-build	1	172	March 30, 2020
Trackster not adding multiple datasets usegalaxy.eu support trackster , custom-genome , igv , custom-build , ucsc	2	291	January 14, 2020
Opening Unicycler assemblies with IGV local usegalaxy.org support tutorial , fasta , custom-genome , igv , custom-build	3	514	December 14, 2019
Extract Genomic DNA won't work usegalaxy.org support fasta-manipulation , bed , fasta , tabular , custom-build	3	882	December 11, 2019
Genome request: Human herpesvirus 1 at NCBI accession NC_001806. Immediate solution: use a Custom genome/build usegalaxy.org support custom-genome , genome , reference-genome , custom-build	2	284	December 4, 2019
Add new version of reference genome: Tribolium castaneum (red flour beetle) Tcas5.2 usegalaxy.org support database , custom-genome , genome , reference-genome , custom-build	2	408	December 4, 2019
Custom genome help and troubleshooting plus where to find HISAT2 alignment statistics custom-genome , hisat2 , custom-build	5	715	October 31, 2019
Bowtie 2 - in Workflow no custom reference genome available -- Solution: Create a Custom Build usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	1	458	August 27, 2019