Topics tagged custom-build

Topic	Replies	Views	Activity
Error in Naive Variant Caller (NVC) in usegalaxy.org -- Resolved usegalaxy.org support database , custom-genome , usegalaxy , custom-build	7	721	February 15, 2021
Extract Genomic DNA Invalid Lines Error usegalaxy.org support bed , custom-genome , troubleshooting , custom-build	6	1115	January 22, 2021
Please add the Xenopus laevis reference genome to Galaxy -- Indexing already planned, use a Custom Genome/Build for now usegalaxy.org support custom-genome , reference-genome , custom-build	6	964	December 18, 2020
Uploading A. thaliana reference genome to RNA STAR usegalaxy.org support custom-genome , troubleshooting , reference-annotation , reference-genome , custom-build	1	609	November 30, 2020
Alternative to DM tools for inbuilt reference sequence usegalaxy.eu support database , custom-genome , data-manager , custom-build	3	803	November 30, 2020
RNA Star alignment to opposum monDom5 genome usegalaxy.org support custom-genome , reference-annotation , reference-genome , custom-build	1	488	November 10, 2020
Request for including 2x fungal genomes in the GALAXY reference genome list usegalaxy.eu support custom-genome , reference-genome , custom-build , epigenetics	2	791	October 29, 2020
Mitochondrial genome usegalaxy.eu support server-admin , custom-genome , custom-build	4	1015	September 20, 2020
Extracting sequences from bed file using tools extract Genomic DNA tool and bed to Fasta tool usegalaxy.org support metadata , custom-genome , bedtools , custom-build	3	2049	June 30, 2020
Why are there no available reference genomes in RNA-STAR? usegalaxy.org support custom-genome , custom-build	3	1207	May 1, 2020
Trackster not adding multiple datasets usegalaxy.eu support trackster , tool-deprecated , igv , custom-build , ucsc	3	920	February 10, 2023
Opening Unicycler assemblies with IGV local usegalaxy.org support gtn-tutorial , custom-genome , igv , custom-build	4	1324	November 2, 2022
Extract Genomic DNA won't work usegalaxy.org support fasta-manipulation , bed , custom-build	3	1661	December 11, 2019
Genome request: Human herpesvirus 1 at NCBI accession NC_001806. Immediate solution: use a Custom genome/build usegalaxy.org support custom-genome , genome , reference-genome , custom-build	2	688	December 4, 2019
Add new version of reference genome: Tribolium castaneum (red flour beetle) Tcas5.2 usegalaxy.org support database , custom-genome , genome , reference-genome , custom-build	2	860	December 4, 2019
Custom genome help and troubleshooting plus where to find HISAT2 alignment statistics custom-genome , custom-build	5	1663	October 31, 2019
Bowtie 2 - in Workflow no custom reference genome available -- Solution: Create a Custom Build usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	1	1141	August 27, 2019