custom-genome

Topic Replies Activity
Alternative to DM tools for inbuilt reference sequence 3 February 12, 2020
Trackster not adding multiple datasets 3 January 14, 2020
Unassiged_nofeatures featurecounts results 2 December 19, 2019
Opening Unicycler assemblies with IGV local 4 December 14, 2019
Genome request: Human herpesvirus 1 at NCBI accession NC_001806. Immediate solution: use a Custom genome/build 3 December 4, 2019
Add new version of reference genome: Tribolium castaneum (red flour beetle) Tcas5.2 3 December 4, 2019
Fragaria Vesca genome -- Use a Custom Reference genome and promote it to a Custom Build 2 July 10, 2019
MiRDeep2 identification of novel and known miRNAs 23 November 2, 2019
Custom genome help and troubleshooting plus where to find HISAT2 alignment statistics 6 October 31, 2019
Can I assemble 1 chromosome only with RNA-Star -- Custom Genome, Variant calling, RNA-seq 3 September 4, 2019
Fasta format genome file in mirdeep2 (custom genome) 4 September 4, 2019
Bowtie 2 - in Workflow no custom reference genome available -- Solution: Create a Custom Build 2 August 27, 2019
bowtie2 problem 2 August 26, 2019
Arabidopsis thaliana TAIR10 genome for HISAT2 3 August 22, 2019
built-in genome index update for felis catus 3 August 22, 2019
BamLeftAlign error unable to find fasta index -- use "fasta" version of genome or natively indexed genome 23 July 18, 2019
mapping RNA-seq data to a composite build of bacterial genomes 2 May 31, 2019
htseq count issue using UCSC-sourced indexed bacterial genomes and NCBI reference annotation (mismatched chrom identifiers) 4 May 17, 2019
add new version of reference genome: C.elegans WS235 ce11 3 March 26, 2019
Addition of reference genome: Phoenix dactylifera 5 February 7, 2019
A. franciscana genome not a listed reference 2 January 29, 2019
Dingo reference genome upload request 2 January 29, 2019
Removal of spaces from fasta file 5 January 2, 2019
RNA seq analysis: deprecated tools, updated tools, learning resources 2 December 10, 2018