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Is a "?" in featureCounts' database field a problem when using a non-built-in genome?
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1
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26
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November 24, 2025
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BAM index, fasta indexes, display applications, custom genome builds, IGV
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3
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89
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September 22, 2025
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Newly launched BN rat genome assembly GRCr8 into the reference genome list?
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1
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31
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August 5, 2025
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Adding a New Reference Genome for Cannabis sativa
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1
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37
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July 29, 2025
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Mapping against a WGS reference
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3
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39
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July 1, 2025
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HISAT2 and RNA STAR reference genomes
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2
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33
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April 25, 2025
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Adding a reference genome to map RNAseq contig
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1
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33
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April 16, 2025
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Reference genome for Camelus dromedarius
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1
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20
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April 3, 2025
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Getting NCBI Reference genome indexed for tools: custom genome, reference genome, reference annotation
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11
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103
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July 22, 2025
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Request to upload/add new version of reference genome of Aedes albopictus (Genome assembly AalbF5)
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1
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31
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February 19, 2025
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Custom reference genome annotation
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6
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1172
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February 14, 2025
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How to select a different reference genome from that already present using the tool RNA-STAR
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2
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28
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February 10, 2025
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UCSC Reference Genome and GTF Fatal Error no valid exons in the GTF file
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3
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155
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January 22, 2025
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RNA STAR options
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1
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29
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December 28, 2024
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Addition Of Reference Genome
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2
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347
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December 23, 2024
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RNAstar Select Reference Genome - Species Not Available - contact the Galaxy team (--genomeDir)
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1
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34
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December 4, 2024
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Bowtie2 reference genome of Goat (Capra Hircus)
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1
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39
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November 25, 2024
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NCBI BLAST+ blastx
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1
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33
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October 10, 2024
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reference genome for STARsolo
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3
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79
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December 4, 2024
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Inquiry about lettuce genome
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2
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101
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October 7, 2024
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I am using HISAT2, but my reference genome Rickettsia rickettsii is missing in the dropdown list.
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15
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111
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August 23, 2024
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SICER is not available for the genome.
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1
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44
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August 13, 2024
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Bowtie2 brucella reference
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1
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37
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August 13, 2024
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FreeBayes variant calling and Snpeff variant annotation
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19
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662
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September 17, 2024
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Adding genome reference?
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2
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236
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April 23, 2024
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How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes
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2
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163
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September 17, 2024
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HISAT2 crash/failure
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8
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1582
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July 22, 2025
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Problems Running MirDeep2
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3
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400
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March 4, 2024
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Reference genome options
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1
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228
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February 14, 2024
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Add a new reference genome for RNAstar
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1
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333
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February 1, 2024
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