| BAM index, fasta indexes, display applications, custom genome builds, IGV |       | 3 | 46 | September 22, 2025 | 
        
          | Newly launched BN rat genome assembly GRCr8 into the reference genome list? |     | 1 | 19 | August 5, 2025 | 
        
          | Adding a New Reference Genome for Cannabis sativa |     | 1 | 24 | July 29, 2025 | 
        
          | Mapping against a WGS reference |       | 3 | 24 | July 1, 2025 | 
        
          | HISAT2 and RNA STAR reference genomes |     | 2 | 26 | April 25, 2025 | 
        
          | Adding a reference genome to map RNAseq contig |     | 1 | 21 | April 16, 2025 | 
        
          | Reference genome for Camelus dromedarius |     | 1 | 6 | April 3, 2025 | 
        
          | Getting NCBI Reference genome indexed for tools: custom genome, reference genome, reference annotation |       | 11 | 73 | July 22, 2025 | 
        
          | Request to upload/add new version of reference genome of Aedes albopictus (Genome assembly AalbF5) |     | 1 | 18 | February 19, 2025 | 
        
          | Custom reference genome annotation |     | 6 | 1154 | February 14, 2025 | 
        
          | How to select a different reference genome from that already present using the tool RNA-STAR |       | 2 | 16 | February 10, 2025 | 
        
          | UCSC Reference Genome and GTF Fatal Error no valid exons in the GTF file |     | 3 | 125 | January 22, 2025 | 
        
          | RNA STAR options |     | 1 | 23 | December 28, 2024 | 
        
          | Addition Of Reference Genome |     | 2 | 343 | December 23, 2024 | 
        
          | RNAstar Select Reference Genome - Species Not Available - contact the Galaxy team (--genomeDir) |     | 1 | 24 | December 4, 2024 | 
        
          | Bowtie2 reference genome of Goat (Capra Hircus) |     | 1 | 15 | November 25, 2024 | 
        
          | NCBI BLAST+ blastx |     | 1 | 26 | October 10, 2024 | 
        
          | reference genome for STARsolo |     | 3 | 57 | December 4, 2024 | 
        
          | Inquiry about lettuce genome |     | 2 | 72 | October 7, 2024 | 
        
          | I am using HISAT2, but my reference genome Rickettsia rickettsii is missing in the dropdown list. |     | 15 | 68 | August 23, 2024 | 
        
          | SICER is not available for the genome. |     | 1 | 30 | August 13, 2024 | 
        
          | Bowtie2 brucella reference |     | 1 | 13 | August 13, 2024 | 
        
          | FreeBayes variant calling and Snpeff variant annotation |     | 19 | 600 | September 17, 2024 | 
        
          | Adding genome reference? |     | 2 | 220 | April 23, 2024 | 
        
          | How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes |     | 2 | 155 | September 17, 2024 | 
        
          | HISAT2 crash/failure |       | 8 | 1547 | July 22, 2025 | 
        
          | Problems Running MirDeep2 |       | 3 | 379 | March 4, 2024 | 
        
          | Reference genome options |     | 1 | 213 | February 14, 2024 | 
        
          | Add a new reference genome for RNAstar |     | 1 | 327 | February 1, 2024 | 
        
          | Custom reference genome troubleshooting |     | 1 | 158 | January 30, 2024 |