Topics tagged custom-genome

Topic	Replies	Views	Activity
Adding genome reference? usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome	2	247	April 23, 2024
How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes Resources fasta-manipulation , reference-index , custom-genome , galaxy-local , troubleshooting , custom-build , resources	2	195	September 17, 2024
HISAT2 crash/failure usegalaxy.org support custom-genome , troubleshooting , mapping , exceeds-memory-error	8	1692	July 22, 2025
Problems Running MirDeep2 custom-genome , tool-help , rbc_mirdeep2	3	438	March 4, 2024
Reference genome options devops-administration , reference-index , custom-genome	1	245	February 14, 2024
Add a new reference genome for RNAstar usegalaxy.org support custom-genome , transcriptomics	1	347	February 1, 2024
Custom reference genome troubleshooting reference-index , custom-genome	1	172	January 30, 2024
Reference genomes at public Galaxy servers: GRCh38/hg38 example Resources reference-index , custom-genome , igv , reference-genome , resources	0	1577	January 29, 2024
Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at Resources fasta-manipulation , custom-genome , reference-genome , custom-build , resources	5	806	January 30, 2024
Reference Genome usegalaxy.org support custom-genome , reference-genome , custom-build	7	727	January 29, 2024
HiSat reference genomce seq.fasta GRCh38 does not work and HiSat2 does not accept other ref.seq.fasta usegalaxy.org support custom-genome , mapping	1	473	December 21, 2023
Mapping Leishmania transcript using RNA STAR custom-genome , reference-annotation , reference-genome , third-party-identities	1	266	December 12, 2023
paired-end histogram failure usegalaxy.org support custom-genome , igv , dropbox , picard_markduplicates	4	303	March 17, 2026
Bedgraph-to-bigwig error usegalaxy.eu support custom-genome , troubleshooting , macs2 , custom-build	4	477	March 17, 2026
Would it be possible for galaxy to include Camelus dromedarius reference genome in built in index ? reference-index , custom-genome , reference-genome , custom-build	4	411	August 16, 2023
Can not launche Extract Genomic DNA usegalaxy.eu support custom-genome	4	363	December 21, 2023
RNA star with reference genome from history error usegalaxy.eu support custom-genome , transcriptomics , reference-annotation , reference-genome , custom-build , deseq2 , rna_star	2	353	July 22, 2025
CHM13 T2T genome not found in options for some tools usegalaxy.org support custom-genome , macs2 , mapping , igv , custom-build	10	1094	July 20, 2023
How to get the genome of interest listed in RNA STAR in Galaxy reference-index , custom-genome , transcriptomics , rna_star	4	467	July 19, 2023
Expanding the built-in reference genomes usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	2	376	July 12, 2023
BWA-MEM2 Built in Genome Indexes is not working. custom-genome , mapping , bwa_mem2	2	323	December 21, 2023
missing reference genome (Aedes aegypti AaegL5.0) usegalaxy.org.au support reference-index , custom-genome , mapping , transcriptomics , custom-build , featurecounts	5	403	June 13, 2023
Version and source of the galaxy built-in genome usegalaxy.eu support reference-index , custom-genome , reference-genome , custom-build	2	1031	May 5, 2023
Source of built in reference genomes usegalaxy.eu support custom-genome , reference-genome , custom-build	1	480	May 5, 2023
RNA seq analysis on transgenic animal custom-genome , mapping , transcriptomics , igv , reference-annotation	13	885	April 26, 2023
Is BWA-meth alignment on PE50 possible? usegalaxy.org support custom-genome , mapping	3	346	April 20, 2023
Unresponsive page when load fasta file to build rice (Oryza sativa) genome usegalaxy.org support custom-genome , mapping , custom-build , server-status	1	296	April 13, 2023
mirdeep2 errors -- Solution: verify input format usegalaxy.org support custom-genome , troubleshooting , reference-genome	1	483	April 13, 2023
Genome build for dog in RNA STAR usegalaxy.eu support reference-index , custom-genome , reference-genome , custom-build	5	427	March 20, 2023
Reference sequence NCBI ID number usegalaxy.org.au support custom-genome , mapping	1	344	March 7, 2023