Topics tagged custom-genome

Topic	Replies	Views	Activity
Why are there no available reference genomes in RNA-STAR? usegalaxy.org support custom-genome , rna-star , custom-build	3	592	May 1, 2020
RNA STAR not allowing genome index choice custom-genome , cloudman , mapping , server-side-error , reference-genome	1	338	April 13, 2020
StringTie "no reference transcript". Solutions? Or need new alignments? usegalaxy.org support custom-genome , cloudman , cloud , cloudlaunch	2	976	April 13, 2020
how to index the Tetrahymena genome? custom-genome , custom-build	1	173	March 30, 2020
Trackster not adding multiple datasets usegalaxy.eu support trackster , custom-genome , igv , custom-build , ucsc	2	292	January 14, 2020
Unassiged_nofeatures featurecounts results usegalaxy.org support custom-genome , featurecounts , gff , gtf , gff3	1	345	December 19, 2019
Opening Unicycler assemblies with IGV local usegalaxy.org support tutorial , fasta , custom-genome , igv , custom-build	3	515	December 14, 2019
Genome request: Human herpesvirus 1 at NCBI accession NC_001806. Immediate solution: use a Custom genome/build usegalaxy.org support custom-genome , genome , reference-genome , custom-build	2	285	December 4, 2019
Add new version of reference genome: Tribolium castaneum (red flour beetle) Tcas5.2 usegalaxy.org support database , custom-genome , genome , reference-genome , custom-build	2	409	December 4, 2019
Fragaria Vesca genome -- Use a Custom Reference genome and promote it to a Custom Build custom-genome	1	212	July 10, 2019
Custom genome help and troubleshooting plus where to find HISAT2 alignment statistics custom-genome , hisat2 , custom-build	5	716	October 31, 2019
Can I assemble 1 chromosome only with RNA-Star -- Custom Genome, Variant calling, RNA-seq variant , custom-genome , rna-star	2	282	September 4, 2019
Fasta format genome file in mirdeep2 (custom genome) usegalaxy.eu support custom-genome , genome , mirna	3	796	September 4, 2019
Bowtie 2 - in Workflow no custom reference genome available -- Solution: Create a Custom Build usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	1	459	August 27, 2019
bowtie2 problem custom-genome , mapping , bowtie2 , memory-failure	1	266	August 26, 2019
Arabidopsis thaliana TAIR10 genome for HISAT2 usegalaxy.org support custom-genome , hisat2 , reference-genome , datacashe	2	456	August 22, 2019
built-in genome index update for felis catus custom-genome , reference-genome , datacashe	2	244	August 22, 2019
BamLeftAlign error unable to find fasta index -- use "fasta" version of genome or natively indexed genome custom-genome , galaxy-local , data-manager	22	1232	July 18, 2019
mapping RNA-seq data to a composite build of bacterial genomes usegalaxy.eu support custom-genome , metagenomics	1	267	May 31, 2019
htseq count issue using UCSC-sourced indexed bacterial genomes and NCBI reference annotation (mismatched chrom identifiers) custom-genome	3	454	May 17, 2019
add new version of reference genome: C.elegans WS235 ce11 usegalaxy.org support database , custom-genome	2	524	March 26, 2019
Addition of reference genome: Phoenix dactylifera usegalaxy.org support database , custom-genome	4	291	February 7, 2019
A. franciscana genome not a listed reference usegalaxy.org support database , custom-genome	1	318	January 29, 2019
Dingo reference genome upload request usegalaxy.org support database , custom-genome	1	351	January 29, 2019
Removal of spaces from fasta file fasta-manipulation , fasta , custom-genome	4	1063	January 2, 2019