Topics tagged deseq2

Topic	Replies	Views	Activity
Using CHM13v2.0 T2T and mm39 gene annotations for RNASeq Analysis usegalaxy.eu support transcriptomics , reference-annotation , reference-genome , tool-help , deseq2 , featurecounts	1	22	November 6, 2025
Using either DESeq2 or limma voom without replicates usegalaxy.org support deseq2 , limma_voom	4	33	October 18, 2025
Assembly statistics in reference based RNA seq analysis_tools Resources assembly , mapping , transcriptomics , resources , rna-seq , deseq2 , stringtie , rnaspades	1	269	September 6, 2023
Problems regarding file upload in DeSeq2 usegalaxy.org support tool-help , deseq2	6	86	April 15, 2025
Latest DESeq2 version (2.11.40.8+galaxy0) gives different result than earlier versions tool-version , transcriptomics , deseq2	3	83	February 26, 2025
DESeq2 for multiple groups usegalaxy.eu support deseq2 , limma_voom	2	143	February 20, 2025
DESeq2 or EdgeR or Limma without replication Resources transcriptomics , resources , deseq2 , edger , limma_voom	9	4998	February 14, 2025
DESeq2 output file column heading missing tool-help , deseq2	1	59	February 14, 2025
Read normalization Resources resources , tool-help , deseq2	4	94	July 22, 2025
DESeq2 input is non-featurecounts transcriptomics , deseq2	1	30	January 14, 2025
Dseq2 tool error deseq2	2	36	November 30, 2024
DEseq2 understanding the log2 fold change Resources resources , tool-help , deseq2	3	644	September 27, 2024
DESeq2 - "invalid 'row.names' length" tool-help , deseq2	1	219	September 26, 2024
DESeq2, using "age" as a continuous variable tool-help , deseq2	2	549	September 5, 2024
Error when running DeSeq2: help resources and input strategies Resources transcriptomics , resources , tool-help , deseq2	4	386	July 22, 2025
About DESeq2 Errors Resources transcriptomics , resources , deseq2 , featurecounts	2	59	September 17, 2024
Ajusting batches from different experiments in DESeq2 analysis transcriptomics , tool-help , deseq2	1	21	August 6, 2024
DESeq2 error using data from tcga downloaded using r tool-help , deseq2	1	31	August 2, 2024
DESeq2 Analysis with tximport Output - Matrix Dimension Error transcriptomics , deseq2 , salmon	5	180	July 22, 2025
Interpreting Reference/Primary Factor Group for DeSeq2 results usegalaxy.org support transcriptomics , deseq2	4	131	July 17, 2024
Deseq2 output 0 lines deseq2	6	72	July 22, 2025
Deseq2 differential expression analysis transcriptomics , annotatemyids , tool-help , deseq2 , featurecounts	2	144	July 22, 2025
Is there a need to include 2nd factor if there's only paired reads in the dataset for DeSeq2? usegalaxy.org support deseq2	4	246	February 21, 2024
DESeq2 with likelihood ratio test usegalaxy.org support deseq2	0	149	January 4, 2024
Time for Running RNA Seq Workflow usegalaxy.org support mapping , transcriptomics , queued-gray-datasets , deseq2 , stringtie	1	306	December 1, 2023
An error occurred while running the tool Sartools DESeq2 public-galaxy-server , transcriptomics , deseq2	3	221	November 28, 2023
Issue with StringTie usegalaxy.org support troubleshooting , mapping , transcriptomics , rna-seq , deseq2 , stringtie	5	1903	December 20, 2023
StringTie producing empty column for gene and transcript counts usegalaxy.org support troubleshooting , mapping , transcriptomics , reference-annotation , rna-seq , deseq2 , stringtie	9	550	December 21, 2023
Troubleshooting DexSeq transcriptomics , deseq2 , rna_star	10	460	November 2, 2023
DeSeq2 Fatal Error - US.UTF-8 cannot be honored transcriptomics , deseq2 , edger	4	1067	November 1, 2023