Topics tagged deseq2

Topic	Replies	Views	Activity
Multi factor error for DESeq2 usegalaxy.org support deseq2 , edger , limma , rna-star	4	141	August 17, 2021
Problem with DESeq2 usegalaxy.org support deseq2	4	174	August 13, 2021
DESEQ2 results file empty (Galaxy) deseq2 , tool-error	7	347	August 9, 2021
DESeq2 Factor Level Design usegalaxy.org support deseq2	4	1578	July 30, 2021
Uploading Salmon quant.sf files into DESeq2 with proper format usegalaxy.org support error , deseq2	0	162	July 20, 2021
DESeq2 with single cell data - do cells from same sample get treated independently during analysis? usegalaxy.eu support deseq2 , scrna-seq	0	134	July 9, 2021
Troubleshooting problems with DESeq2 usegalaxy.org support deseq2	8	95	June 30, 2021
Differentially expressed genes deseq2 , edger , reference-annotation , gtf	12	276	June 30, 2021
DEseq2 error with different numbers of rows usegalaxy.eu support deseq2 , featurecounts , reference-annotation , gtf	12	415	May 13, 2021
feature counts vs readspergene.out.tab for DESeq2 count matrix usegalaxy.org support deseq2 , rna-star	3	285	June 11, 2021
difference output differentially expressed genes by Cuffdiff, Deseq2, edgreR usegalaxy.org support rna-seq , deseq2 , cuffdiff , edger	1	128	May 23, 2021
The use of different built-in reference genomes -- Reference annotation + Reference genome for RNA-seq analysis usegalaxy.org support rna-seq , deseq2 , featurecounts , reference-annotation , gtf	4	132	May 20, 2021
DEseq2 error; Job output not returned from cluster deseq2	5	142	May 19, 2021
DESeq2's output normalized usegalaxy.org support rna-seq , deseq2	2	214	May 18, 2021
DESeq2 log2 fold change usegalaxy.org support deseq2	3	142	May 17, 2021
DESEQ2 - How does it work? usegalaxy.org.au support rna-seq , deseq2	5	381	April 26, 2021
Cuffdiff bam sort error usegalaxy.org support deseq2 , cuffdiff , featurecounts , transcriptomics , tool-deprecated	1	126	April 13, 2021
DESeq2 - 3 factor levels usegalaxy.org support deseq2	3	357	March 10, 2021
Error while running the transcript count file obtained using StringTie on DeSeq usegalaxy.org support stringtie , deseq2 , transcriptomics	4	185	March 9, 2021
RNA-Seq Differential Expression Analysis usegalaxy.org support rna-seq , tutorial , deseq2 , htseq-count , edger	1	172	February 4, 2021
Interpreting DESeq2 results tutorial , deseq2	1	299	January 18, 2021
Error when performing Deseq2 analysis help usegalaxy.org support deseq2	0	105	January 8, 2021
error message from DESeq2/EdgeR usegalaxy.org support error , deseq2 , edger	5	2974	December 22, 2020
DESeq2 data input tutorial , deseq2 , transcriptomics , edger , limma	4	243	December 8, 2020
DESeq2 error running htseq-count tutorial , troubleshooting , deseq2 , htseq-count , edger	2	537	November 20, 2020
edgeR error running htseq-count files tutorial , troubleshooting , deseq2 , htseq-count , edger	2	248	November 20, 2020
DESeq2 job paused and cannot be resumed - Input dataset 'xxx' failed to properly set metadata usegalaxy.org support metadata , error , deseq2 , error-metadata	2	222	November 17, 2020
Interpretation of DESeq reults deseq2	1	161	November 10, 2020
What Annotation file should be used for EdgeR? usegalaxy.eu support rna-seq , deseq2 , annotation , edger	1	305	August 21, 2020
Big difference in DEGs number from different tools rna-seq , deseq2 , edger , limma , rna-star	2	199	July 29, 2020