# \#dexseq

**URL:** https://help.galaxyproject.org/tag/dexseq/290.md

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## [Dexseq stuck on 'Installing tools dependencies' on local instance of Galaxy](https://help.galaxyproject.org/t/dexseq-stuck-on-installing-tools-dependencies-on-local-instance-of-galaxy/9542)

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**Author:** [@Mehul\_Vora](https://help.galaxyproject.org/u/Mehul_Vora)\
**Replies:** 1\
**Last updated:** [April 12, 2023, 11:58pm UTC](https://help.galaxyproject.org/t/dexseq-stuck-on-installing-tools-dependencies-on-local-instance-of-galaxy/9542 "2023-04-12T23:58:23Z")

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Hello - complete n00b here so hopefully its something very quick. I am running a local instance of Galaxy 22.05 on Ubuntu. I’ve managed to set up the instance, become admin and install some tools from the toolshed (RNA…

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## [why is \`plotDEXSeq\` output pdf empty](https://help.galaxyproject.org/t/why-is-plotdexseq-output-pdf-empty/2930)

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**Author:** [@HanMue](https://help.galaxyproject.org/u/HanMue)\
**Replies:** 12\
**Last updated:** [July 22, 2020, 9:18am UTC](https://help.galaxyproject.org/t/why-is-plotdexseq-output-pdf-empty/2930 "2020-07-22T09:18:30Z")

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Hey everyone, I have a short question concerning the Input Parameters of the Tool plotDEXSeq (Visualization of the per gene DEXSeq results (Galaxy Version 1.28.1.0)): I am not sure about 2 Input parameters in the foll…

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## [Workflow for differential exon usage/alternative splicing](https://help.galaxyproject.org/t/workflow-for-differential-exon-usage-alternative-splicing/2633)

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**Author:** [@HanMue](https://help.galaxyproject.org/u/HanMue)\
**Replies:** 2\
**Last updated:** [December 16, 2019, 10:08am UTC](https://help.galaxyproject.org/t/workflow-for-differential-exon-usage-alternative-splicing/2633 "2019-12-16T10:08:45Z")

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Hi everyone, I am looking for a workflow to identify and visualize differential exon usage/alternative splicing in mouse RNASeq data in Galaxy. What I did up to now was a de novo transcriptome reconstruction to identif…

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## [DEXSeq output - untitled columns](https://help.galaxyproject.org/t/dexseq-output-untitled-columns/2346)

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**Author:** [@guray003](https://help.galaxyproject.org/u/guray003)\
**Replies:** 0\
**Last updated:** [October 24, 2019, 12:45am UTC](https://help.galaxyproject.org/t/dexseq-output-untitled-columns/2346 "2019-10-24T00:45:09Z")

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Hi everyone. I’m new to using DEXSeq on Galaxy and had question regarding format of the results file which has 14 labelled columns plus columns for each sample. As I understand it, when initiating an analysis, the prima…

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## [Missing tool: Annotate DESeq2/DEXSeq output tables](https://help.galaxyproject.org/t/missing-tool-annotate-deseq2-dexseq-output-tables/2293)

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**Author:** [@gerrit\_thomsen](https://help.galaxyproject.org/u/gerrit_thomsen)\
**Replies:** 1\
**Last updated:** [October 16, 2019, 5:06pm UTC](https://help.galaxyproject.org/t/missing-tool-annotate-deseq2-dexseq-output-tables/2293 "2019-10-16T17:06:30Z")

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Hi, I am an absolute beginner regarding Galaxy and trying my first RNA-Seq workflow. I cannot find the following tool: Annotate DESeq2/DEXSeq output tables. I am on https://usegalaxy.org/ and want to annotate gene names…