|
cut and run: MACS2 error
|
|
7
|
23
|
July 9, 2025
|
|
Running nextflow nfcore pipelines using a singularity
|
|
6
|
1509
|
August 13, 2024
|
|
Methlydacel methylation bias weird output - methylation almost 100% with strange spikes
|
|
2
|
67
|
June 14, 2024
|
|
How to normalised ChIP-Seq data set with Spike-in
|
|
1
|
210
|
June 8, 2024
|
|
HiCexplorer issues
|
|
1
|
88
|
April 29, 2024
|
|
Troubleshooting Issue with hicBuildMatrix Tool for Analyzing HiC Data
|
|
2
|
125
|
March 4, 2024
|
|
hicBuildMatrix seeting for restriction cut file or a bin size
|
|
1
|
137
|
March 4, 2024
|
|
ChIPseeker missing first peak in the interval file?
|
|
2
|
243
|
January 10, 2024
|
|
MACS on galaxy giving me an error with python: bad interpreter
|
|
1
|
176
|
December 21, 2023
|
|
The plotHeatmap (DeepTool) does not produce the desired heatmap/ ChIP-seq analysis (H3K4me3)
|
|
4
|
640
|
October 27, 2023
|
|
(HiCPlotTAD)This will generate an empty track!!
|
|
12
|
345
|
October 21, 2023
|
|
Rfile throwing error
|
|
1
|
210
|
October 20, 2023
|
|
Usage help -- single end versus paired end BAM options
|
|
5
|
621
|
November 10, 2023
|
|
What is the blue and red exactly in Plotheatmap after computeMatrix of my chip-seq bw files?
|
|
0
|
363
|
October 5, 2023
|
|
Help with making peaks MACS Chip-sequence analysis
|
|
1
|
396
|
October 2, 2023
|
|
How to convert fastq.gz to fastqsanger.gz
|
|
4
|
1131
|
August 24, 2023
|
|
Metilene tool fails on ENCODE bigWigToBedGraph converted data
|
|
16
|
787
|
December 21, 2023
|
|
MethylDackel, GTN Tutorial Galaxies, and DNA Methylation
|
|
9
|
1016
|
June 20, 2023
|
|
Metilene tool usage
|
|
7
|
979
|
June 20, 2023
|
|
Score column in narrowPeak file?
|
|
2
|
1252
|
May 10, 2023
|
|
How to arrange samples for Diffbind analysis
|
|
6
|
1568
|
May 4, 2023
|
|
FastQC analysis of ChIPseq sample
|
|
2
|
628
|
December 20, 2023
|
|
Chip-seq biological replicates, multiple timepoints
|
|
1
|
375
|
April 13, 2023
|
|
Help with Diffbind and multiple conditions
|
|
1
|
521
|
April 12, 2023
|
|
Bowtie2 mapping statistics
|
|
1
|
460
|
March 29, 2023
|
|
Problems with my Bismark Mapper results
|
|
1
|
343
|
March 1, 2023
|
|
Can't find Bowtie version1 in the tool boxes
|
|
2
|
335
|
October 31, 2022
|
|
new annotated bacterial genome
|
|
4
|
647
|
January 26, 2023
|
|
outMultimapperOrder in STAR alignment
|
|
2
|
473
|
September 23, 2022
|
|
Error in generating plot using plotFingerprint
|
|
2
|
324
|
September 21, 2022
|