|
Bismark mapping with Fatal Error exit
|
|
2
|
32
|
October 16, 2025
|
|
Cut and run: MACS2 error
|
|
6
|
71
|
July 9, 2025
|
|
Running nextflow nfcore pipelines using a singularity
|
|
6
|
1619
|
August 13, 2024
|
|
Methlydacel methylation bias weird output - methylation almost 100% with strange spikes
|
|
2
|
104
|
June 14, 2024
|
|
How to normalised ChIP-Seq data set with Spike-in
|
|
1
|
263
|
June 8, 2024
|
|
HiCexplorer issues
|
|
1
|
120
|
April 29, 2024
|
|
Troubleshooting Issue with hicBuildMatrix Tool for Analyzing HiC Data
|
|
2
|
141
|
March 4, 2024
|
|
hicBuildMatrix seeting for restriction cut file or a bin size
|
|
1
|
166
|
March 4, 2024
|
|
ChIPseeker missing first peak in the interval file?
|
|
2
|
272
|
January 10, 2024
|
|
MACS on galaxy giving me an error with python: bad interpreter
|
|
1
|
187
|
December 21, 2023
|
|
The plotHeatmap (DeepTool) does not produce the desired heatmap/ ChIP-seq analysis (H3K4me3)
|
|
4
|
759
|
October 27, 2023
|
|
(HiCPlotTAD)This will generate an empty track!!
|
|
12
|
411
|
October 21, 2023
|
|
Rfile throwing error
|
|
1
|
222
|
October 20, 2023
|
|
Usage help -- single end versus paired end BAM options
|
|
5
|
699
|
November 10, 2023
|
|
What is the blue and red exactly in Plotheatmap after computeMatrix of my chip-seq bw files?
|
|
0
|
380
|
October 5, 2023
|
|
Help with making peaks MACS Chip-sequence analysis
|
|
1
|
424
|
October 2, 2023
|
|
How to convert fastq.gz to fastqsanger.gz
|
|
4
|
1414
|
August 24, 2023
|
|
Metilene tool fails on ENCODE bigWigToBedGraph converted data
|
|
16
|
877
|
December 21, 2023
|
|
MethylDackel, GTN Tutorial Galaxies, and DNA Methylation
|
|
9
|
1051
|
June 20, 2023
|
|
Metilene tool usage
|
|
7
|
1033
|
June 20, 2023
|
|
Score column in narrowPeak file?
|
|
2
|
1350
|
May 10, 2023
|
|
How to arrange samples for Diffbind analysis
|
|
6
|
1738
|
May 4, 2023
|
|
FastQC analysis of ChIPseq sample
|
|
2
|
657
|
December 20, 2023
|
|
Chip-seq biological replicates, multiple timepoints
|
|
1
|
397
|
April 13, 2023
|
|
Help with Diffbind and multiple conditions
|
|
1
|
549
|
April 12, 2023
|
|
Bowtie2 mapping statistics
|
|
1
|
490
|
March 29, 2023
|
|
Problems with my Bismark Mapper results
|
|
1
|
361
|
March 1, 2023
|
|
Can't find Bowtie version1 in the tool boxes
|
|
2
|
351
|
October 31, 2022
|
|
new annotated bacterial genome
|
|
4
|
684
|
January 26, 2023
|
|
outMultimapperOrder in STAR alignment
|
|
2
|
501
|
September 23, 2022
|