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Cut and run: MACS2 error
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6
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28
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July 9, 2025
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Running nextflow nfcore pipelines using a singularity
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6
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1538
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August 13, 2024
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Methlydacel methylation bias weird output - methylation almost 100% with strange spikes
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2
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71
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June 14, 2024
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How to normalised ChIP-Seq data set with Spike-in
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1
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220
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June 8, 2024
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HiCexplorer issues
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1
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89
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April 29, 2024
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Troubleshooting Issue with hicBuildMatrix Tool for Analyzing HiC Data
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2
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125
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March 4, 2024
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hicBuildMatrix seeting for restriction cut file or a bin size
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1
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137
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March 4, 2024
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ChIPseeker missing first peak in the interval file?
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2
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245
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January 10, 2024
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MACS on galaxy giving me an error with python: bad interpreter
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1
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177
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December 21, 2023
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The plotHeatmap (DeepTool) does not produce the desired heatmap/ ChIP-seq analysis (H3K4me3)
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4
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659
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October 27, 2023
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(HiCPlotTAD)This will generate an empty track!!
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12
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356
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October 21, 2023
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Rfile throwing error
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1
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210
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October 20, 2023
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Usage help -- single end versus paired end BAM options
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5
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626
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November 10, 2023
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What is the blue and red exactly in Plotheatmap after computeMatrix of my chip-seq bw files?
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0
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363
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October 5, 2023
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Help with making peaks MACS Chip-sequence analysis
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1
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398
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October 2, 2023
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How to convert fastq.gz to fastqsanger.gz
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4
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1174
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August 24, 2023
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Metilene tool fails on ENCODE bigWigToBedGraph converted data
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16
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790
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December 21, 2023
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MethylDackel, GTN Tutorial Galaxies, and DNA Methylation
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9
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1019
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June 20, 2023
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Metilene tool usage
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7
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980
|
June 20, 2023
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Score column in narrowPeak file?
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2
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1265
|
May 10, 2023
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How to arrange samples for Diffbind analysis
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6
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1608
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May 4, 2023
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FastQC analysis of ChIPseq sample
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2
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630
|
December 20, 2023
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Chip-seq biological replicates, multiple timepoints
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1
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378
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April 13, 2023
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Help with Diffbind and multiple conditions
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1
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524
|
April 12, 2023
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Bowtie2 mapping statistics
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1
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461
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March 29, 2023
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Problems with my Bismark Mapper results
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1
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346
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March 1, 2023
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Can't find Bowtie version1 in the tool boxes
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2
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336
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October 31, 2022
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new annotated bacterial genome
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4
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648
|
January 26, 2023
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outMultimapperOrder in STAR alignment
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2
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477
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September 23, 2022
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Error in generating plot using plotFingerprint
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2
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324
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September 21, 2022
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